Alternatives and similar repositories for vitessce-python

Users that are interested in vitessce-python are comparing it to the libraries listed below

• labsyspharm / cylinter
  An Interactive Image Segmentation Filter for Multiplex Microscopy
  ☆30Updated 4 months ago
• scverse / napari-spatialdata
  Interactive visualization of spatial omics data
  ☆58Updated last week
• scverse / spatialdata-io
  ☆62Updated last week
• hubmapconsortium / spatial-transcriptomics-pipeline
  ☆29Updated last year
• miti-consortium / MITI
  Minimum Information about Tissue Imaging
  ☆20Updated last year
• GuignardLab / napari-sc3D-viewer
  A plugin to visualise 3D spatial single cell omics
  ☆22Updated last year
• scverse / conference-2024
  Slides and Notebooks for scverse 2024
  ☆17Updated 8 months ago
• HelenaLC / SpatialData
  ☆17Updated last week
• MannLabs / scPortrait
  scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images
  ☆46Updated this week
• HiDiHlabs / ssam
  ☆28Updated 7 months ago
• saeyslab / napari-sparrow
  https://sparrow-pipeline.readthedocs.io/en/latest/
  ☆27Updated last week
• saeyslab / harpy
  Single-cell spatial proteomics analysis that makes you happy!
  ☆28Updated this week
• labsyspharm / scimap
  Spatial Single-Cell Analysis Toolkit
  ☆91Updated 2 weeks ago
• ciccalab / SIMPLI
  SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
  ☆37Updated last year
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆27Updated 7 months ago
• schienstockd / cecelia
  Framework for image and flow cytometry analysis
  ☆26Updated 3 weeks ago
• scverse / spatialdata-plot
  Static plotting for spatialdata
  ☆58Updated last week
• acycliq / pciSeq
  A probabilistic cell typing algorithm for spatial transcriptomics.
  ☆23Updated this week
• giovp / spatialdata-sandbox
  ☆13Updated last month
• camlab-bioml / astir
  astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
  ☆52Updated 11 months ago
• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆37Updated 6 months ago
• VasylVaskivskyi / microaligner
  Image registration (alignment) software for large microscopy images
  ☆25Updated last year
• scverse / spatialdata-notebooks
  ☆53Updated this week
• buettnerlab / convexgating
  Optimal gating strategies for flow and mass cytometry.
  ☆12Updated last month
• KerenLab / CellSighter
  ☆32Updated last year
• nf-core / mcmicro
  An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.
  ☆15Updated last month
• angelolab / Nimbus-Inference
  ☆16Updated 2 weeks ago
• PreibischLab / STIM
  Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.
  ☆27Updated last week
• Feanor007 / MESA
  A python package for Multiomics and Ecological Spatial Analysis (MESA)
  ☆18Updated last month
• CellProfiling / pipex
  A pipeline to transform images into valuable analysis items
  ☆13Updated this week