vitessce / vitessce-pythonLinks
Python API and Jupyter widget for Vitessce
☆60Updated this week
Alternatives and similar repositories for vitessce-python
Users that are interested in vitessce-python are comparing it to the libraries listed below
Sorting:
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated 2 months ago
- Interactive visualization of spatial omics data☆75Updated this week
- ☆88Updated this week
- ☆29Updated last year
- Static plotting for spatialdata☆73Updated last week
- ☆19Updated 3 weeks ago
- Minimum Information about Tissue Imaging☆21Updated 2 years ago
- A plugin to visualise 3D spatial single cell omics☆20Updated 3 months ago
- ☆27Updated last year
- An introduction to OME-Zarr for big bioimaging data☆24Updated this week
- Slides and Notebooks for scverse 2024☆17Updated last year
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆39Updated last month
- Automatically annotate cell types, consistently across samples.☆17Updated this week
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆103Updated this week
- https://sparrow-pipeline.readthedocs.io/en/latest/☆33Updated last week
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆86Updated 2 months ago
- Single-cell spatial proteomics analysis that makes you happy!☆51Updated this week
- Framework for image and flow cytometry analysis☆32Updated 3 weeks ago
- An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.☆30Updated last week
- Spatial omics analysis and visualization library☆22Updated last week
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆66Updated last month
- Segmentation error aware clustering for multiplexed imaging☆19Updated last year
- A probabilistic cell typing algorithm for spatial transcriptomics.☆25Updated 2 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆39Updated 4 months ago
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 4 years ago
- Optimal gating strategies for flow and mass cytometry.☆16Updated 2 months ago
- Image registration (alignment) software for large microscopy images☆27Updated 2 years ago
- Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effe…☆42Updated last year
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆46Updated 7 months ago
- Graph-based Decoding for In Situ Sequencing☆10Updated 5 years ago