vitessce / vitessce-pythonLinks
Python API and Jupyter widget for Vitessce
☆59Updated 3 weeks ago
Alternatives and similar repositories for vitessce-python
Users that are interested in vitessce-python are comparing it to the libraries listed below
Sorting:
- ☆80Updated last week
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated 3 weeks ago
- Interactive visualization of spatial omics data☆73Updated last week
- ☆29Updated last year
- Static plotting for spatialdata☆71Updated this week
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆40Updated last month
- ☆27Updated last year
- ☆18Updated this week
- Minimum Information about Tissue Imaging☆21Updated 2 years ago
- https://sparrow-pipeline.readthedocs.io/en/latest/☆33Updated last week
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆102Updated this week
- Slides and Notebooks for scverse 2024☆17Updated last year
- Segmentation error aware clustering for multiplexed imaging☆19Updated 10 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆84Updated 2 weeks ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆35Updated last year
- An introduction to OME-Zarr for big bioimaging data☆22Updated this week
- Single-cell spatial proteomics analysis that makes you happy!☆45Updated last week
- Automatically annotate cell types, consistently across samples.☆17Updated last week
- Spatial Single-Cell Analysis Toolkit☆104Updated 5 months ago
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆22Updated 7 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆39Updated 2 months ago
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 4 years ago
- Framework for image and flow cytometry analysis☆32Updated last month
- Spatial omics analysis and visualization library☆21Updated this week
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆46Updated 5 months ago
- ☆31Updated last month
- A pipeline to transform images into valuable analysis items☆16Updated 5 months ago
- An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.☆26Updated last week
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆66Updated this week
- A probabilistic cell typing algorithm for spatial transcriptomics.☆25Updated 3 weeks ago