Alternatives and similar repositories for pytometry:

Users that are interested in pytometry are comparing it to the libraries listed below

• chanzuckerberg / cellxgene-census
  CZ CELLxGENE Discover Census
  ☆100Updated 2 weeks ago
• scverse / mudata
  Multimodal Data (.h5mu) implementation for Python
  ☆95Updated last month
• saezlab / decoupler-py
  Python package to perform enrichment analysis from omics data.
  ☆192Updated this week
• theislab / prophet
  ☆30Updated this week
• YosefLab / scib-metrics
  Accelerated, Python-only, single-cell integration benchmarking metrics
  ☆58Updated last week
• DendrouLab / panpipes
  Multi-modal single cell analysis pipelines
  ☆57Updated last week
• emdann / milopy
  Python implementation of Milo for differential abundance testing on KNN graph
  ☆68Updated 2 months ago
• saezlab / omnipath
  Python client for the OmniPath web service
  ☆44Updated 2 months ago
• YeoLab / bento-tools
  A Python toolkit for subcellular analysis of spatial transcriptomics data
  ☆77Updated last month
• Novartis / cellxgene-gateway
  Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…
  ☆63Updated last year
• lilab-bcb / harmony-pytorch
  ☆53Updated last month
• haniffalab / webatlas-pipeline
  A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas
  ☆61Updated last week
• scverse / scvi-tutorials
  Notebooks used in scvi-tools tutorials
  ☆52Updated last week
• Genentech / decima
  Decima is a Python library to train sequence models on single-cell RNA-seq data.
  ☆35Updated last week
• scverse / pertpy
  Perturbation Analysis in the scverse ecosystem.
  ☆171Updated this week
• mossjacob / pyslingshot
  Python implementation of the Slingshot pseudotime algorithm
  ☆60Updated last year
• welch-lab / MultiVelo
  Multi-omic velocity inference
  ☆110Updated 6 months ago
• theislab / CellFlow
  Modeling complex perturbations with CellFlow
  ☆29Updated this week
• theislab / scTab
  ☆58Updated 7 months ago
• bioFAM / mofapy2
  Multi-omics factor analysis v2
  ☆44Updated 6 months ago
• scverse / spatialdata-notebooks
  ☆53Updated last week
• dcjones / proseg
  Probabilistic cell segmentation for in situ spatial transcriptomics
  ☆72Updated this week
• mousepixels / sanbomics
  bioinformatics plotting and tools
  ☆56Updated 11 months ago
• theislab / graphcompass
  GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems
  ☆35Updated 3 weeks ago
• settylab / Mellon
  Non-parametric density inference for single-cell analysis.
  ☆69Updated last month
• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆36Updated 5 months ago
• YosefLab / Cassiopeia
  A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction
  ☆87Updated last week
• saeyslab / harpy
  Single-cell spatial proteomics analysis that makes you happy!
  ☆27Updated this week
• chanzuckerberg / single-cell-curation
  Code and documentation for the curation of cellxgene datasets
  ☆44Updated this week
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆51Updated 2 weeks ago