Alternatives and similar repositories for pytometry

Users that are interested in pytometry are comparing it to the libraries listed below

• chanzuckerberg / cellxgene-census
  CZ CELLxGENE Discover Census
  ☆114Updated this week
• scverse / mudata
  Multimodal Data (.h5mu) implementation for Python
  ☆104Updated 2 weeks ago
• saezlab / corneto
  Unified knowledge-driven network inference from omics data
  ☆90Updated last week
• NygenAnalytics / CyteType
  Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data
  ☆92Updated 3 weeks ago
• saezlab / omnipath
  Python client for the OmniPath web service
  ☆55Updated 5 months ago
• jkobject / scDataLoader
  a dataloader to work with large single cell datasets from lamindb
  ☆32Updated this week
• Genentech / decima
  Decima is a Python library to train sequence models on single-cell RNA-seq data.
  ☆58Updated this week
• YeoLab / bento-tools
  A Python toolkit for subcellular analysis of spatial transcriptomics data
  ☆84Updated last month
• lilab-bcb / harmony-pytorch
  ☆59Updated 7 months ago
• scverse / pertpy
  Single-cell perturbation analysis
  ☆224Updated last week
• scverse / spatialdata-notebooks
  ☆62Updated last week
• haniffalab / webatlas-pipeline
  A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas
  ☆65Updated 5 months ago
• sagar87 / spatialproteomics
  Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…
  ☆39Updated last week
• theislab / scTab
  ☆61Updated last year
• Novartis / cellxgene-gateway
  Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…
  ☆66Updated 3 weeks ago
• mossjacob / pyslingshot
  Python implementation of the Slingshot pseudotime algorithm
  ☆69Updated last month
• KrishnaswamyLab / MELD
  Quantifying experimental perturbations at single cell resolution
  ☆112Updated last year
• cellarium-ai / cellarium-ml
  Distributed single-cell data analysis.
  ☆35Updated 2 weeks ago
• theislab / prophet
  ☆38Updated last week
• theislab / DRVI
  Unsupervised Deep Disentangled Representation of Single-Cell Omics
  ☆56Updated last week
• openproblems-bio / openproblems-v2
  Formalizing and benchmarking open problems in single-cell genomics
  ☆57Updated 6 months ago
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆73Updated 2 years ago
• scverse / scvi-tutorials
  Notebooks used in scvi-tools tutorials
  ☆58Updated this week
• LouisFaure / scFates
  a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
  ☆64Updated 2 weeks ago
• scverse / decoupler
  Python package to perform enrichment analysis from omics data.
  ☆245Updated this week
• nitzanlab / biolord
  ☆89Updated last year
• shuxiaoc / maxfuse
  ☆56Updated last year
• scverse / ecosystem-packages
  Registry for scverse ecosystem packages
  ☆31Updated this week
• Teichlab / bbknn
  Batch balanced KNN
  ☆176Updated 2 years ago
• parashardhapola / scarf
  Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…
  ☆109Updated last month