Flow & mass cytometry analytics.
☆60Oct 5, 2026Updated this week
Alternatives and similar repositories for pytometry
Users that are interested in pytometry are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Build contrasts for models defined with formulaic☆13Updated this week
- Read fcs files.☆11Nov 13, 2025Updated 10 months ago
- A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces☆229Mar 30, 2026Updated 6 months ago
- Optimal gating strategies for flow and mass cytometry.☆16Jul 22, 2026Updated 2 months ago
- A Python toolbox for quantitative, reproducible flow cytometry analysis☆226Jul 17, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Fast array utilities☆15Oct 2, 2026Updated last week
- Python package to generate high dimensional Flow Cytometry datasets using imputation by XGBoost regression☆13Sep 30, 2024Updated 2 years ago
- Shadow objects for AnnData and MuData (experimental)☆11Feb 28, 2025Updated last year
- Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effe…☆46Jul 8, 2026Updated 3 months ago
- A data-centric flow/mass cytometry automated analysis framework☆43Jan 22, 2025Updated last year
- Automatically annotate cell types, consistently across samples.☆30Updated this week
- A user-friendly library that brings familiar DataFrame-style operations to AnnData objects with a simple and expressive API.☆18Aug 24, 2026Updated last month
- A Python library for reading and writing Flow Cytometry Standard (FCS) files☆60Sep 20, 2026Updated 2 weeks ago
- ☆17Sep 27, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Genomic Features in Python from BioConductor's AnnotationHub☆22Sep 28, 2026Updated last week
- muon is a multimodal omics Python framework☆279Updated this week
- Manage biological ontologies.☆27Updated this week
- Single-cell differential expression☆19Apr 23, 2026Updated 5 months ago
- Pipeline for harmonising immunological receptor–epitope interactions☆17Sep 28, 2026Updated last week
- High-Performance Sparse Matrix Library☆19Nov 23, 2025Updated 10 months ago
- FlowUtils is a Python package containing various utility functions related to flow cytometry analysis, primarily focused on compensation …☆22Nov 4, 2025Updated 11 months ago
- An interface for Nested Stochastic Block Model for single cell analysis☆39Sep 2, 2026Updated last month
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆39Jul 11, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- GREAT algorithm in Python☆16Oct 24, 2022Updated 3 years ago
- Python package to perform enrichment analysis from omics data.☆296Updated this week
- CZ CELLxGENE Discover Census☆128Aug 4, 2026Updated 2 months ago
- Access public biological ontologies.☆14Aug 7, 2024Updated 2 years ago
- Flow cytometry analysis workflow. The aim of this project is to provide an intuitive workflow for the analysis of high-dimensionality cyt…☆28Apr 29, 2026Updated 5 months ago
- Spatial analysis toolkit for single cell multiplexed tissue data☆30Sep 2, 2024Updated 2 years ago
- Reference mapping for single-cell genomics☆412Jun 26, 2026Updated 3 months ago
- A python parser for reading fcs files supporting FCS 2.0, 3.0, 3.1☆84Nov 27, 2024Updated last year
- Fit generalized linear models in python.☆28Mar 6, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- The complete FlowSOM package known from R, now available in Python!☆35Sep 28, 2026Updated last week
- A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.☆85Jul 24, 2026Updated 2 months ago
- Registry for scverse ecosystem packages☆39Updated this week
- Cookiecutter template for scverse☆90Updated this week
- Subpopulation detection in high-dimensional single-cell data☆75Oct 5, 2020Updated 6 years ago
- Multimodal Data (.h5mu) implementation for Python☆134Updated this week
- A scanpy extension to analyse single-cell TCR and BCR data.☆266Updated this week