Flow & mass cytometry analytics.
☆61Oct 19, 2026Updated last week
Alternatives and similar repositories for pytometry
Users that are interested in pytometry are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Optimal gating strategies for flow and mass cytometry.☆16Jul 22, 2026Updated 3 months ago
- This repository extends scanpy to handle flow and mass cytometry data.☆10Aug 5, 2022Updated 4 years ago
- Build contrasts for models defined with formulaic☆13Oct 19, 2026Updated last week
- Read fcs files.☆11Updated this week
- A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces☆231Oct 20, 2026Updated last week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effe…☆48Jul 8, 2026Updated 3 months ago
- Fast array utilities☆15Updated this week
- A data-centric flow/mass cytometry automated analysis framework☆43Jan 22, 2025Updated last year
- A Python toolbox for quantitative, reproducible flow cytometry analysis☆227Jul 17, 2026Updated 3 months ago
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated this week
- Automatically annotate cell types, consistently across samples.☆30Updated this week
- Mixed-effect model to test differences in cell type proportions from single-cell data, in Python☆10Aug 6, 2026Updated 2 months ago
- Python package to generate high dimensional Flow Cytometry datasets using imputation by XGBoost regression☆13Sep 30, 2024Updated 2 years ago
- A Python alternative to `clustree` for assessing single-cell RNA-sequencing clusters.☆20Mar 11, 2026Updated 7 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Holoviz Anndata Interface☆14Oct 19, 2026Updated last week
- Shadow objects for AnnData and MuData (experimental)☆11Feb 28, 2025Updated last year
- Flow cytometry analysis workflow. The aim of this project is to provide an intuitive workflow for the analysis of high-dimensionality cyt…☆28Apr 29, 2026Updated 6 months ago
- A Python library for reading and writing Flow Cytometry Standard (FCS) files☆61Updated this week
- Single-cell differential expression☆21Oct 18, 2026Updated last week
- The complete FlowSOM package known from R, now available in Python!☆35Updated this week
- Python package to perform enrichment analysis from omics data.☆300Updated this week
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆39Jul 11, 2025Updated last year
- An interface for Nested Stochastic Block Model for single cell analysis☆40Sep 2, 2026Updated last month
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A user-friendly library that brings familiar DataFrame-style operations to AnnData objects with a simple and expressive API.☆18Aug 24, 2026Updated 2 months ago
- Registry for scverse ecosystem packages☆42Oct 20, 2026Updated last week
- FlowUtils is a Python package containing various utility functions related to flow cytometry analysis, primarily focused on compensation …☆22Nov 4, 2025Updated 11 months ago
- Manage biological ontologies.☆27Oct 7, 2026Updated 3 weeks ago
- Access public biological ontologies.☆14Aug 7, 2024Updated 2 years ago
- muon is a multimodal omics Python framework☆279Oct 19, 2026Updated last week
- Slides and Notebooks for scverse 2024☆16Sep 24, 2024Updated 2 years ago
- An R package for working with LaminDB instances.☆11Oct 21, 2026Updated last week
- A modular tool for proportion analysis in single-cell sequencing data☆28Feb 26, 2026Updated 8 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Multimodal Data (.h5mu) implementation for Python☆134Updated this week
- ☆17Sep 27, 2026Updated last month
- High-Performance Sparse Matrix Library☆19Nov 23, 2025Updated 11 months ago
- Clonotype Neighbor Graph Analysis☆100Jun 15, 2026Updated 4 months ago
- Modeling complex perturbations with CellFlow☆11Jul 17, 2026Updated 3 months ago
- Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverse☆72Updated this week
- AnnData interoperability in R☆201Updated this week