hkim240 / CellNeighborEXLinks
CellNeighborEX: Deciphering Neighbor-Dependent Gene Expression from Spatial Transcriptomics Data
☆15Updated last year
Alternatives and similar repositories for CellNeighborEX
Users that are interested in CellNeighborEX are comparing it to the libraries listed below
Sorting:
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆40Updated last month
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆11Updated 9 months ago
- ☆29Updated 3 months ago
- ☆55Updated last year
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆27Updated last year
- ☆14Updated last month
- ☆29Updated 2 weeks ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆37Updated 6 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 8 months ago
- Spatial Cellular Estimator for Tumors☆56Updated last week
- ☆37Updated 2 years ago
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆31Updated 2 years ago
- ☆10Updated 2 years ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 5 months ago
- A computational tool for identification of 3D multi-modal spatial neighborhoods☆12Updated this week
- ☆31Updated 5 months ago
- ☆22Updated 2 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆55Updated 3 months ago
- ☆13Updated 9 months ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Updated 2 years ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Updated 5 months ago
- Unsupervised Inference of Developmental Directions for Single Cells☆22Updated last year
- CAST package☆40Updated 9 months ago
- ☆52Updated 2 years ago
- ☆11Updated last year
- Spatial direct messaging detected by bivariate Moran☆27Updated 3 weeks ago
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆49Updated 7 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆73Updated 9 months ago
- ☆21Updated last year
- scTM: A package for topic modelling in transcriptomics data☆21Updated last year