hkim240 / CellNeighborEX
CellNeighborEX: Deciphering Neighbor-Dependent Gene Expression from Spatial Transcriptomics Data
☆13Updated 9 months ago
Alternatives and similar repositories for CellNeighborEX:
Users that are interested in CellNeighborEX are comparing it to the libraries listed below
- ☆12Updated 2 months ago
- Single-Cell Inference of Class Switch Recombination☆19Updated 3 weeks ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆33Updated this week
- Unsupervised Inference of Developmental Directions for Single Cells☆21Updated last year
- ☆53Updated 8 months ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆9Updated 6 months ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆17Updated 6 months ago
- R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…☆12Updated 6 months ago
- ☆21Updated last year
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 2 years ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆34Updated 2 months ago
- Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)☆19Updated last year
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆30Updated 2 years ago
- ☆10Updated last year
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆26Updated 8 months ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆29Updated 7 months ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆15Updated 3 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆27Updated 4 months ago
- ☆27Updated 5 months ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆25Updated 2 months ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆27Updated last year
- cell type deconvolution for multi-condition bulk RNA-seq data☆24Updated 3 years ago
- ☆13Updated last year
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 6 months ago
- analysis script for GBM single cell RNA seq data☆17Updated 3 years ago
- ☆17Updated this week
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆31Updated 10 months ago
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Updated last month