zcang / COMMOT
☆97Updated 6 months ago
Related projects ⓘ
Alternatives and complementary repositories for COMMOT
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆115Updated 6 months ago
- ☆49Updated 3 months ago
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆104Updated 2 months ago
- Spatial mapping of cell types by integration of transcriptomics data☆87Updated 2 years ago
- ☆99Updated 8 months ago
- ☆107Updated 2 years ago
- ☆107Updated 2 years ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆120Updated 2 months ago
- Code used to benchmark Xenium☆40Updated 4 months ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆85Updated last week
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆61Updated this week
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆96Updated this week
- A tool for semi-automatic cell type harmonization and integration☆91Updated 9 months ago
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆53Updated 5 months ago
- BANKSY: spatial clustering☆73Updated 3 months ago
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆137Updated this week
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆64Updated this week
- Join subcellular Visium HD bins into cells☆52Updated this week
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆145Updated 4 months ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆104Updated 9 months ago
- Predict RNA velocity through deep learning☆62Updated 10 months ago
- overview of spatial datasets☆67Updated 8 months ago
- Metacells - Single-cell RNA Sequencing Analysis☆95Updated last month
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆119Updated last year
- Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq☆11Updated 7 months ago
- Single-cell disease relevance score (scDRS)☆113Updated 3 weeks ago
- ☆89Updated 4 years ago
- Tutorials for the SCOG Virtual Workshop ‘Spatial transcriptomics data analysis in Python’ - May 23-24, 2022☆49Updated 2 years ago
- Scissor package☆182Updated 5 months ago
- Quantifying metabolism activity at the single-cell resolution☆114Updated 2 months ago