zcang / COMMOTLinks
☆124Updated last year
Alternatives and similar repositories for COMMOT
Users that are interested in COMMOT are comparing it to the libraries listed below
Sorting:
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆133Updated 6 months ago
- ☆59Updated last year
- Join subcellular Visium HD bins into cells☆117Updated 3 months ago
- ☆123Updated last year
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆130Updated 3 weeks ago
- Code used to benchmark Xenium☆65Updated last year
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆72Updated 7 months ago
- BANKSY: spatial clustering☆119Updated 2 weeks ago
- Spatial mapping of cell types by integration of transcriptomics data☆93Updated 3 years ago
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆94Updated 2 months ago
- ☆125Updated 3 years ago
- ☆122Updated 3 years ago
- Repository for ENACT pipeline for end-to-end analysis of Visium HD data☆59Updated 2 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆90Updated 6 months ago
- Metacells - Single-cell RNA Sequencing Analysis☆111Updated 11 months ago
- Tutorials for the SCOG Virtual Workshop ‘Spatial transcriptomics data analysis in Python’ - May 23-24, 2022☆53Updated 3 years ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆154Updated 2 weeks ago
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆128Updated last year
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆76Updated 2 years ago
- ☆122Updated 4 months ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆113Updated last year
- A tool for semi-automatic cell type harmonization and integration☆109Updated 5 months ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆77Updated 4 months ago
- Predict RNA velocity through deep learning☆70Updated last year
- Code for the spatialLIBD R/Bioconductor package and shiny app☆96Updated 3 months ago
- Spatial-Linked Alignment Tool☆88Updated 8 months ago
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆173Updated last year
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆119Updated 3 months ago
- This repository includes codes and data example used in the "Integrative Spatial Analysis Reveals Tumor Heterogeneity and Immune Colon…☆14Updated 3 months ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆137Updated 2 years ago