massonix / tabula_muris_networks
R markdown notebooks for the Tabula Muris network analysis in Iacono et al. (2019)
☆12Updated 3 years ago
Alternatives and similar repositories for tabula_muris_networks:
Users that are interested in tabula_muris_networks are comparing it to the libraries listed below
- ☆16Updated 5 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- Single-cell Orientation Tracing☆21Updated 3 years ago
- ☆12Updated 9 months ago
- ☆32Updated 5 years ago
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Updated 2 years ago
- Single-cell Case Control Analysis☆48Updated 5 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆39Updated 2 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆44Updated last year
- ☆18Updated last year
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 6 months ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆37Updated 3 years ago
- Downstream analysis script for sci-fate (TF-gene linkage analysis / cell linkage analysis)☆24Updated 5 years ago
- A tool for removing doublets from single-cell RNA-seq data☆73Updated 4 years ago
- ☆29Updated 2 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆43Updated last year
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 3 years ago
- scRNA-seq cell type identification☆44Updated 5 years ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- ☆41Updated 4 years ago
- ☆33Updated 5 years ago
- scWGCNA☆59Updated 2 years ago
- Clone identification from single-cell data☆61Updated 2 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 3 years ago
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆29Updated 4 years ago
- ClusterMap is an R package to analyze and compare two or more single cell expression datasets.☆20Updated 2 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 4 months ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago