massonix / tabula_muris_networks
R markdown notebooks for the Tabula Muris network analysis in Iacono et al. (2019)
☆12Updated 3 years ago
Alternatives and similar repositories for tabula_muris_networks:
Users that are interested in tabula_muris_networks are comparing it to the libraries listed below
- Single-cell Orientation Tracing☆21Updated 3 years ago
- ☆18Updated 11 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 3 months ago
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆20Updated 2 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆42Updated last year
- Single-cell Case Control Analysis☆48Updated 3 months ago
- ☆12Updated 7 months ago
- ☆15Updated 8 months ago
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- ☆31Updated 5 years ago
- scRNA-seq cell type identification☆44Updated 5 years ago
- Cluster Identity Predictor (R package implementation)☆19Updated 2 years ago
- ☆16Updated 5 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- ☆29Updated last year
- ☆33Updated 5 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆31Updated last year
- Framework for Unified Single-Cell Analysis (FUSCA) is a software package for single-cell data analysis developed in R. At the moment, it …☆18Updated 2 years ago
- ☆48Updated 4 years ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 2 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆26Updated 7 months ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆28Updated 2 years ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆31Updated 11 months ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated 10 months ago
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Updated 3 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 3 months ago
- ☆31Updated 9 months ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 3 years ago
- ☆29Updated 3 weeks ago