atakanekiz / CIPR-Package
Cluster Identity Predictor (R package implementation)
☆20Updated 3 years ago
Alternatives and similar repositories for CIPR-Package:
Users that are interested in CIPR-Package are comparing it to the libraries listed below
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆37Updated 3 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆39Updated 2 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 2 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆36Updated last year
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Updated 2 years ago
- Repository for "Effective methods for bulk RNA-seq deconvolution using scRNA-seq and snRNA-seq derived transcriptomes"☆15Updated last year
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆31Updated 10 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆25Updated 3 years ago
- ☆29Updated 2 years ago
- General notes and resources on how to analyze Spatial Transcriptomics data☆12Updated last year
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated 10 months ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆20Updated 2 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 5 months ago
- ☆41Updated 4 years ago
- ☆18Updated last year
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 5 months ago
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- Clone of the Bioconductor repository for the batchelor package.☆16Updated last month
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Updated last year
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 2 years ago
- ☆30Updated 3 months ago
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆26Updated this week
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 6 months ago
- A database of useful gene signatures for single-cell analysis☆21Updated last year
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆36Updated 4 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 6 months ago
- Cell type pipes for R☆51Updated last year
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆41Updated 3 weeks ago
- R package gathering a set of wrappers to apply various integration methods to Seurat objects (and rate such methods)☆16Updated last month