atakanekiz / CIPR-Package
Cluster Identity Predictor (R package implementation)
☆20Updated 3 years ago
Alternatives and similar repositories for CIPR-Package:
Users that are interested in CIPR-Package are comparing it to the libraries listed below
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆35Updated 3 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆29Updated 8 months ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 2 years ago
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Updated 2 years ago
- Clone of the Bioconductor repository for the batchelor package.☆16Updated 8 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 4 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆60Updated 4 months ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 2 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆33Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆26Updated 3 months ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆19Updated 2 years ago
- R package for specialised analysis of single cell data☆37Updated 2 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 3 months ago
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- ☆39Updated 3 years ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆31Updated 9 months ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆15Updated 5 months ago
- ☆29Updated last year
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆36Updated 2 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆40Updated last week
- Functions for single cell data analysis☆31Updated 3 years ago
- Single-cell Orientation Tracing☆21Updated 3 years ago
- A database of useful gene signatures for single-cell analysis☆20Updated 11 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 4 months ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆19Updated last year
- A tool for removing doublets from single-cell RNA-seq data☆72Updated 4 years ago
- ☆45Updated 5 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆33Updated 4 years ago
- ☆16Updated 5 years ago