Alternatives and similar repositories for MouseSpinalCordAtlas

Users that are interested in MouseSpinalCordAtlas are comparing it to the libraries listed below

• saeyslab / brainimmuneatlas
  Overview of the scripts used to analyse the brainimmuneatlas data
  ☆19Updated 4 years ago
• juliendelile / Antler
  R package for single-cell RNA-sequencing analysis
  ☆15Updated 4 years ago
• bjstewart1 / kidney_sc_immune
  Repository for scRNAseq study of human kidneys
  ☆15Updated 6 years ago
• atakanekiz / CIPR-Package
  Cluster Identity Predictor (R package implementation)
  ☆20Updated 3 years ago
• JiekaiLab / SOT
  Single-cell Orientation Tracing
  ☆21Updated 3 years ago
• rikenbit / scTensor
  R package for detection of cell-cell interaction using Non-negative Tensor Decomposition
  ☆34Updated 2 months ago
• quadbio / simspec
  Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)
  ☆33Updated last year
• NBISweden / single-cell_sib_scilifelab
  SIB/Scilifelab autumn school in single cell omics 2019.
  ☆22Updated 5 years ago
• quadbio / primate_cerebral_organoids
  Reusable scripts and functions archive for the paper "Organoid single-cell genomic atlas uncovers human-specific features of brain develo…
  ☆36Updated 4 years ago
• Morriseylab / scExtras
  ☆13Updated last year
• shenorrLabTRDF / cellAlign
  ☆42Updated 4 years ago
• cbib / Seurat-Integrate
  R package gathering a set of wrappers to apply various integration methods to Seurat objects (and rate such methods)
  ☆32Updated 3 months ago
• mkarikom / RSoptSC
  Cell-cell communication and lineage inference for scRNA-seq data
  ☆24Updated 2 years ago
• wmacnair / psupertime
  psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels
  ☆41Updated 3 years ago
• bioinfoDZ / RISC
  A R package for integrated scRNA-seq data analysis using the RPCI algorithm
  ☆44Updated last year
• JinmiaoChenLab / FastIntegration
  FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
  ☆23Updated 10 months ago
• kharchenkolab / cacoa
  Single-cell Case Control Analysis
  ☆52Updated last week
• SGDDNB / GeneSwitches
  Ordering gene-expression and functional events in single-cell experiments
  ☆23Updated last year
• MarioniLab / StabMap
  Mosaic single cell data integration using non-overlapping features
  ☆37Updated 2 years ago
• Oshlack / speckle
  R package for specialised analysis of single cell data
  ☆38Updated 2 years ago
• SCA-IRCM / SingleCellSignalR
  R package for Bioconductor submission
  ☆37Updated 2 years ago
• KChen-lab / bindSC
  Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…
  ☆36Updated 2 years ago
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆74Updated 4 years ago
• arc85 / celltalker
  Inference of cell-cell communication from single-cell RNAseq data
  ☆48Updated 4 months ago
• ZJUFanLab / CellTalkDB
  A manually curated database of literature-supported ligand-receptor interactions in human and mouse
  ☆31Updated last year
• yinqingl / nucseq_analysis
  single nuclei RNA-seq analysis toolbox
  ☆10Updated 8 years ago
• amcdavid / CellaRepertorium
  Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)
  ☆15Updated 2 months ago
• califano-lab / single-cell-pipeline
  ☆50Updated 5 years ago
• bicciatolab / popsicleR
  popsicleR, a flexible R package aimed at providing most of the necessary quality controls and preliminary information for complete and de…
  ☆24Updated last year
• powellgenomicslab / DropletQC
  Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data
  ☆40Updated 3 years ago