10XGenomics / janesick_nature_comms_2023_companion
Code companion to the publication "High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spatial and in situ analysis of FFPE tissue"
☆18Updated last year
Alternatives and similar repositories for janesick_nature_comms_2023_companion:
Users that are interested in janesick_nature_comms_2023_companion are comparing it to the libraries listed below
- Spatial direct messaging detected by bivariate Moran☆26Updated 3 months ago
- Interoperability between SpatialData and the Xenium Explorer☆21Updated 8 months ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆26Updated 9 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆34Updated last month
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆17Updated 6 months ago
- ☆47Updated 3 weeks ago
- CAST package☆34Updated 5 months ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆34Updated 2 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics