Alternatives and similar repositories for METI

Users that are interested in METI are comparing it to the libraries listed below

• FrancisCrickInstitute / TRACERx-PHLEX
  Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging
  ☆13Updated 4 months ago
• YiLab-SC / scHolography
  ☆11Updated last year
• BodenmillerGroup / SCPathology_publication
  The Single-Cell Pathology Landscape of Breast Cancer
  ☆27Updated 5 years ago
• GuangyuWangLab2021 / Thor
  Cell level integrated analysis of tissue histology and spatial transcriptomics
  ☆28Updated 2 months ago
• ding-lab / mushroom
  A computational tool for identification of 3D multi-modal spatial neighborhoods
  ☆14Updated 4 months ago
• jianhuupenn / TESLA
  Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA
  ☆63Updated last year
• QihuangZhang / CeLEry
  CeLEry: cell location recovery in single-cell RNA sequencing
  ☆35Updated 10 months ago
• bsungwoo / spSeudoMap
  spSeudoMap: cell type mapping of spatial transcriptomics using unmatched single-cell RNA-seq data
  ☆13Updated last year
• ddb-qiwang / S2Omics
  ☆18Updated last week
• tanlabcode / CytoCommunity
  The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains
  ☆34Updated 8 months ago
• maximemeylan / Meylan_et_al_2022
  ☆20Updated 4 years ago
• loicchadoutaud / sCellST
  ☆13Updated last month
• zhengli09 / BASS
  Bayesian Analytics for Spatial Segmentation
  ☆30Updated 7 months ago
• SBIlab / NetBio
  ☆34Updated 3 years ago
• KnottLab / pembroRT-CancerCell2023
  Code related to Shiao, Gouin III, Ing, et al, Cancer Cell 2023.
  ☆13Updated 2 years ago
• katherine-benjamin / topact-paper
  Code for the paper `Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics"
  ☆12Updated last year
• gevaertlab / GBM360
  Spatial cellular architecture predicts prognosis in glioblastoma - Nature Communications
  ☆25Updated 2 years ago
• dpeerlab / ENVI
  ☆52Updated 2 months ago
• Tang-Lab-super / ciTLSs
  Cross-modal Identification of Tertiary Lymphoid Structures
  ☆23Updated last year
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆32Updated 5 months ago
• NCICCGPO / gdan-tmp-models
  Containerized cancer subtype prediction tools for gene expression, miRNA, DNA methylation, somatic mutations and copy number variation.
  ☆28Updated 8 months ago
• Banovich-Lab / Spatial_PF
  ☆34Updated 2 months ago
• LiHongCSBLab / SOAPy
  ☆31Updated 10 months ago
• wanglabtongji / SpaceScanner
  Scanner of specific spatial patterns in tissues
  ☆14Updated 3 years ago
• walsh-quail-labs / IMC_Brain
  ☆20Updated 2 years ago
• Patchouli-M / SequencingCancerFinder
  ☆41Updated 7 months ago
• ding-lab / ST_subclone_publication
  Code for spatial subclone paper
  ☆14Updated 11 months ago
• SunXQlab / ST-deconvoulution
  ☆11Updated last year
• BiomedicalMachineLearning / stlearn_interactive
  Interactive applications of stlearn
  ☆15Updated 2 years ago
• immunogenomics / RA_Atlas_CITEseq
  RA Synovial Single-cell Multimodal Cell Atlas
  ☆19Updated last year