Alternatives and similar repositories for scCancer

Users that are interested in scCancer are comparing it to the libraries listed below

• Xiaxy-XuLab / PanCAF
  ☆37Updated 3 years ago
• harbourlab / uphyloplot2
  Draw phylogenetic trees of tumor evolution
  ☆87Updated 2 years ago
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆80Updated 5 months ago
• Miaoyx323 / stCancer
  ☆22Updated last year
• youqiongye / CRC_scRNAseq
  ☆48Updated 3 years ago
• yanailab / PanCancer
  Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…
  ☆31Updated 3 years ago
• meta-cancer / scPLC
  Codes for the scPLC project
  ☆74Updated 3 years ago
• jackbibby1 / SCPA
  R package for pathway analysis in scRNA-seq data
  ☆77Updated last year
• gabrielakinker / CCLE_heterogeneity
  ☆62Updated 2 years ago
• SaskiaFreytag / spatial_brain_cancer
  ☆14Updated 2 years ago
• AndersonHu85 / ccRCC_multiomics
  ☆17Updated 2 years ago
• Lan-lab / sc-GC
  ☆32Updated 3 years ago
• ThomasJamesMitchell / deSCeRNAMut
  Method for de novo mutation calling from droplet based single cell RNA seq data
  ☆14Updated 4 years ago
• bio-Pixel / panVC
  ☆57Updated last year
• tiroshlab / 3ca
  Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".
  ☆131Updated last year
• SGI-LungCancer / SingleCell
  Code repository for single cell RNA-seq
  ☆40Updated 5 years ago
• LungCellAtlas / scRNAseq_pipelines
  Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas
  ☆39Updated 5 years ago
• data2intelligence / SpaCET
  Spatial Cellular Estimator for Tumors
  ☆60Updated 3 weeks ago
• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆51Updated last year
• Teichlab / PanGIAtlas
  Integration of gut cell atlases
  ☆33Updated 3 months ago
• Fraternalilab / sciCSR
  Single-Cell Inference of Class Switch Recombination
  ☆20Updated 2 months ago
• chensujun / scRNA
  ☆33Updated 4 years ago
• aliceygao / pan-Fibroblast
  ☆57Updated last year
• liziyie / scDVA
  An R shiny based tool used for single cell RNA-seq data visualization and analysis.
  ☆34Updated 5 years ago
• lifei176 / Single-cell-atlas-of-sex-differences-and-androgen-effects
  ☆17Updated last year
• aet21 / SCENT
  Estimation of Single-Cell Potency with Single Cell Entropy
  ☆43Updated 2 years ago
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆100Updated last year
• ChanLab-UTSW / BreastCancer_Integrated
  ☆32Updated 11 months ago
• snehamitra / SCARlink
  ☆62Updated last month
• arc85 / singleseqgset
  Gene set enrichment analysis for single-cell RNAseq data
  ☆30Updated 2 years ago