czythu / scCancerLinks
<Bioinformatics> scCancer2: data-driven in-depth annotations of the tumor microenvironment at single-level resolution
☆27Updated last month
Alternatives and similar repositories for scCancer
Users that are interested in scCancer are comparing it to the libraries listed below
Sorting:
- ☆22Updated 11 months ago
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆31Updated 3 years ago
- Integration of gut cell atlases☆27Updated 8 months ago
- Gene group activity utility functions for Scanpy☆91Updated 9 months ago
- R package for pathway analysis in scRNA-seq data☆75Updated last year
- Gene set enrichment analysis for single-cell RNAseq data☆28Updated 2 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated 2 months ago
- ☆58Updated last year
- ☆31Updated 7 months ago
- ☆22Updated 11 months ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆42Updated 2 years ago
- ☆37Updated 3 years ago
- Code repository for single cell RNA-seq☆37Updated 5 years ago
- Spatial Cellular Estimator for Tumors☆57Updated last month
- Codes for the scPLC project☆68Updated 2 years ago
- Single-Cell Inference of Class Switch Recombination☆19Updated last month
- Method for de novo mutation calling from droplet based single cell RNA seq data☆14Updated 4 years ago
- Draw phylogenetic trees of tumor evolution☆86Updated 2 years ago
- Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…☆51Updated 4 years ago
- Accurate and fast cell marker gene identification with COSG☆51Updated 6 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆38Updated 4 years ago
- ☆54Updated last year
- ☆47Updated 3 years ago
- ☆32Updated 4 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆42Updated last week
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆28Updated last year
- Unsupervised Inference of Developmental Directions for Single Cells☆22Updated last year
- Collection of scripts for analysis of pan fetal immune atlas☆28Updated 3 years ago
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆126Updated last year
- Functions for single cell data analysis☆32Updated 4 years ago