Alternatives and similar repositories for scSpace

Users that are interested in scSpace are comparing it to the libraries listed below

• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆99Updated last year
• ZJUFanLab / scNiche
  a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution
  ☆49Updated 4 months ago
• xiaoyeye / TFvelo
  ☆46Updated last year
• ZJUFanLab / scRank
  A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…
  ☆62Updated 2 months ago
• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆71Updated 2 years ago
• mcgilldinglab / scSemiProfiler
  A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…
  ☆26Updated 7 months ago
• saezlab / visium_heart
  Spatial transcriptomics of heart tissue
  ☆106Updated 2 years ago
• matanhofree / crc-immune-hubs
  Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…
  ☆40Updated 4 years ago
• LungCellAtlas / HLCA_reproducibility
  This repository contains all code used for the Human Lung Cell Atlas project.
  ☆58Updated 2 years ago
• ZJUFanLab / SpaTalk
  Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data
  ☆74Updated 11 months ago
• data2intelligence / SpaCET
  Spatial Cellular Estimator for Tumors
  ☆60Updated last week
• KlugerLab / GeneTrajectory
  R implementation of GeneTrajectory
  ☆68Updated last year
• SchubertLab / mvTCR
  ☆56Updated last year
• madilabcode / scNET
  ☆59Updated 2 weeks ago
• JiangBioLab / DeepTalk
  Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…
  ☆27Updated last year
• Junjie-Hu / NSCLC-immunotherapy
  ☆28Updated last year
• lanagarmire / Asgard
  ☆45Updated last year
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆51Updated 8 months ago
• WPZgithub / CEFCON
  Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data
  ☆26Updated last year
• genecell / COSG
  Accurate and fast cell marker gene identification with COSG
  ☆54Updated 2 weeks ago
• Masood-Lab / PDAC_Mets
  The current study provides a comprehensive insights into the PDAC metastatic biology.
  ☆24Updated last year
• Teichlab / HCA_Heart_ver2
  ☆40Updated 2 years ago
• theislab / neural_organoid_atlas
  Reproducibility repository for the Human Neural Organoid Atlas publication
  ☆42Updated last year
• livnatje / DIALOGUE
  DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…
  ☆116Updated last year
• YMa-lab / IRIS
  Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics
  ☆41Updated 11 months ago
• Teichlab / cellhint
  A tool for semi-automatic cell type harmonization and integration
  ☆117Updated 2 months ago
• YDaiLab / scRegulate
  Python Toolkit for Transcription Factor Activity Inference and Clustering of scRNA-seq Data
  ☆29Updated 3 weeks ago
• cliffren / PENCIL
  PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.
  ☆28Updated last year
• LiQian-XC / sctour
  A deep learning architecture for robust inference and accurate prediction of cellular dynamics
  ☆70Updated 5 months ago
• gabrielakinker / CCLE_heterogeneity
  ☆61Updated 2 years ago