ZJUFanLab / scSpaceLinks
an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial transcriptome references
☆23Updated 2 years ago
Alternatives and similar repositories for scSpace
Users that are interested in scSpace are comparing it to the libraries listed below
Sorting:
- Gene group activity utility functions for Scanpy☆79Updated 6 months ago
- ☆45Updated last year
- A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…☆50Updated last month
- Spatial transcriptomics of heart tissue☆88Updated last year
- R implementation of GeneTrajectory☆59Updated last year
- Predict RNA velocity through deep learning☆70Updated last year
- ☆53Updated 8 months ago
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆71Updated 5 months ago
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆24Updated 8 months ago
- ☆36Updated 2 weeks ago
- Non-parametric density inference for single-cell analysis.☆72Updated last month
- ☆40Updated this week
- Single-Cell Inference of Class Switch Recombination☆19Updated 3 months ago
- ☆37Updated 2 years ago
- ☆43Updated last year
- ☆27Updated this week
- a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution☆34Updated 2 months ago
- ACTIONet single-cell analysis framework☆42Updated 9 months ago
- RA Synovial Single-cell Multimodal Cell Atlas☆15Updated last year
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Updated 4 months ago
- This repository contains all code used for the Human Lung Cell Atlas project.☆51Updated last year
- Single cell omics biology annotations☆51Updated 2 months ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆36Updated 5 months ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆113Updated last year
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆39Updated 3 years ago
- A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…☆24Updated last month
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆61Updated last week
- A tool for semi-automatic cell type harmonization and integration☆108Updated 3 months ago
- Spatial Cellular Estimator for Tumors☆53Updated last month
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago