an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial transcriptome references
☆23May 20, 2023Updated 3 years ago
Alternatives and similar repositories for scSpace
Users that are interested in scSpace are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code and data for the Nature Machine Intelligence paper "Knowledge graph-enhanced molecular contrastive learning with functional prompt".☆11May 16, 2023Updated 3 years ago
- a spatial deconvolution method based on deep learning frameworks, which converts bulk transcriptomes into spatially resolved single-cell …☆137Mar 22, 2023Updated 3 years ago
- A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…☆75Oct 16, 2025Updated 8 months ago
- The source code and results of performance comparison on the detail of the process among scCATCH, CellAssign, Garnett, SingleR, scMap and…☆15Jan 8, 2023Updated 3 years ago
- an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…☆29Mar 11, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆79Jan 17, 2025Updated last year
- cell type deconvolution for multi-condition bulk RNA-seq data☆33Feb 28, 2022Updated 4 years ago
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆27Mar 16, 2025Updated last year
- ☆46May 4, 2024Updated 2 years ago
- BulkSignalR☆27Jun 23, 2026Updated last week
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆37Jul 1, 2024Updated last year
- Analysis and visualization of RNA-Seq results☆32Jun 22, 2026Updated last week
- ☆94Aug 29, 2025Updated 10 months ago
- ☆132Mar 27, 2022Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- CellRank 2's reproducibility repository.☆15Sep 4, 2024Updated last year
- Cell clustering and communication network inference for single-cell transcriptomics☆15Sep 18, 2024Updated last year
- Spatial Cellular Estimator for Tumors☆65May 5, 2026Updated last month
- CellNeighborEX: Deciphering Neighbor-Dependent Gene Expression from Spatial Transcriptomics Data☆16Mar 13, 2026Updated 3 months ago
- A computational tool for identification of 3D multi-modal spatial neighborhoods☆15Aug 1, 2025Updated 10 months ago
- A High Effect Marker Gene Search Tool for Single-cell RNA-seq Analysis☆35Sep 14, 2024Updated last year
- ☆33May 4, 2025Updated last year
- codes for article☆18Jan 14, 2026Updated 5 months ago
- Code associated with the manuscript Spatial Transcriptomics to define transcriptional patterns of zonation and structural components in t…☆22Aug 19, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆16Mar 6, 2025Updated last year
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆22Jun 22, 2026Updated last week
- splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq☆23Nov 28, 2025Updated 7 months ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆19Aug 29, 2023Updated 2 years ago
- Feature selection for preserving biological trajectories in single-cell data☆22Updated this week
- scAB detects multiresolution cell states with clinical significance☆23Nov 14, 2022Updated 3 years ago
- Tool for IDentification and Enumeration of Spliced and Unspliced Read Fragments☆18Jun 23, 2026Updated last week
- Integrate Analysis and Visualization for Bioinformatic Enrichment Analyzer☆83Dec 16, 2023Updated 2 years ago
- ☆17Jul 13, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Feb 22, 2025Updated last year
- An R package to infer cell-cell interactions and clinical values in tumor immune microenvironment through gene pairs.☆25Jun 28, 2024Updated 2 years ago
- ☆14Jun 10, 2025Updated last year
- Deconvolution of spatial transcriptomics at single-cell resolution☆22Mar 25, 2026Updated 3 months ago
- Spatially-resolved Transcriptomics via Epitope Anchoring☆20Apr 1, 2024Updated 2 years ago
- ☆64Aug 26, 2025Updated 10 months ago
- Translation of DeepJDOT into pytorch.☆10May 31, 2021Updated 5 years ago