ZxZhou4150 / RedeconveLinks
Deconvolution of spatial transcriptomics at single-cell resolution
☆20Updated last year
Alternatives and similar repositories for Redeconve
Users that are interested in Redeconve are comparing it to the libraries listed below
Sorting:
- Hierarchical annotation of immune cells n scRNA-Seq data based on ssGSEA algorithm.☆10Updated last year
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆14Updated 2 years ago
- Lung cancer 10X analysis☆11Updated 4 years ago
- ☆22Updated 2 years ago
- Calculate NEPC risk score from bulk transcriptome data or single-cell RNA-seq for prostate cancer☆15Updated last year
- ☆22Updated 2 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆35Updated last month
- scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells…☆16Updated this week
- ☆16Updated last year
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Updated 9 months ago
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Updated 9 months ago
- ☆12Updated last year
- single-cell Contamination Detection and Correction☆15Updated 11 months ago
- a simple R data package for curated cancer pathway-specific gene lists☆13Updated 5 years ago
- ☆17Updated 2 years ago
- Unsupervised Inference of Developmental Directions for Single Cells☆22Updated last year
- ☆10Updated last year
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆53Updated 11 months ago
- Code used to process the data of the HBCA project☆32Updated last year
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆29Updated last year
- ☆17Updated 2 years ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆14Updated last year
- Spatial transcriptomics of heart tissue☆27Updated 3 years ago
- ☆32Updated 9 months ago
- Ordering gene-expression and functional events in single-cell experiments☆27Updated last year
- ☆24Updated 2 years ago
- analysis script for GBM single cell RNA seq data☆22Updated 4 years ago
- Hierarchical Cell Annotation☆26Updated last year
- NEPAL is to calculate neuroendocrine (NE) risk score from bulk and single-cell transcriptomics of both human and mouse prostate cancer (P…☆15Updated last year
- ☆14Updated 4 months ago