A novel method named stDiff investigates the potential of employing diffusion models for single-cell omics generation.
☆26Mar 13, 2024Updated 2 years ago
Alternatives and similar repositories for stDiff
Users that are interested in stDiff are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single-Cell Multimodal Prediction via Transformer☆27Feb 7, 2024Updated 2 years ago
- ☆13May 28, 2025Updated last year
- Identify spatial domain☆92May 29, 2025Updated last year
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆49Aug 7, 2021Updated 4 years ago
- ☆62Apr 26, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆12May 24, 2024Updated 2 years ago
- [PR 2025] Code for UMPIRE☆13Mar 10, 2025Updated last year
- ☆18Mar 16, 2025Updated last year
- CAST package☆44Oct 26, 2024Updated last year
- CellNeighborEX: Deciphering Neighbor-Dependent Gene Expression from Spatial Transcriptomics Data☆16Mar 13, 2026Updated 4 months ago
- MorphLink: Bridging Cellular Morphological Behaviors and Molecular Dynamics in Multi-modal Spatial Omics☆18Dec 7, 2025Updated 7 months ago
- PyTorch implementation of HisToGene☆58Nov 30, 2021Updated 4 years ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆43Jul 1, 2024Updated 2 years ago
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆82May 24, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- An offical repo for paper "Single-cells are Spatial Tokens: Transformers for Spatially Resolved Transcriptomics Data Imputation"☆18Aug 11, 2023Updated 2 years ago
- ☆16Nov 3, 2025Updated 8 months ago
- ☆20Jan 6, 2024Updated 2 years ago
- CellVerse: Do Large Language Models Really Understand Cell Biology?☆16May 14, 2025Updated last year
- Spatially-aware quality control for spatial transcriptomics☆16Oct 22, 2025Updated 9 months ago
- Spatial Experiments raster - a rasterization preprocessing framework for scalable spatial omics data analysis☆19Apr 23, 2025Updated last year
- A model developed for the generation of scRNA-seq data☆94Jan 21, 2026Updated 6 months ago
- High-Resolution Spatial Transcriptomics Using Histology Images with HisToSGE (Pathology Image Large Model, Transformers)☆22Jul 24, 2024Updated last year
- ☆89Jun 2, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- [Nature Biomedical Engineering]This is the official code repo for the paper: spEMO: Exploring the Capacity of Foundation Models for Analy…☆22May 9, 2026Updated 2 months ago
- ☆27Mar 31, 2026Updated 3 months ago
- STPath: A Generative Foundation Model for Integrating Spatial Transcriptomics and Whole Slide Images☆53Jul 27, 2025Updated 11 months ago
- ☆27May 16, 2025Updated last year
- [ICLR 2025] Stem: Gene Expression Inference from Histology Images☆54Apr 15, 2025Updated last year
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆145Jul 8, 2026Updated 2 weeks ago
- Foundation Model for Multiplex Spatial Proteomic Images☆203Apr 20, 2026Updated 3 months ago
- Gene Expression Prediction from Histology Images via Hypergraph Neural Networks☆18May 19, 2025Updated last year
- Cell localization and counting: 1) Exponential Distance Transform Maps for Cell Localization; 2) Multi-scale Hypergraph-based Feature Ali…☆24Apr 10, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆52May 19, 2025Updated last year
- Spatial alignment of single cell transcriptomic data.☆370Jul 1, 2025Updated last year
- TISSUE (Transcript Imputation with Spatial Single-cell Uncertainty Estimation) provides tools for estimating well-calibrated uncertainty …☆45Mar 10, 2024Updated 2 years ago
- ☆10May 31, 2022Updated 4 years ago
- Vector representations of gene co-expression in single cell RNAseq.☆37Jun 7, 2026Updated last month
- Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA☆68Mar 18, 2024Updated 2 years ago
- Interoperability between SpatialData and the Xenium Explorer☆26Jul 31, 2024Updated last year