A novel method named stDiff investigates the potential of employing diffusion models for single-cell omics generation.
☆26Mar 13, 2024Updated 2 years ago
Alternatives and similar repositories for stDiff
Users that are interested in stDiff are comparing it to the libraries listed below
Sorting:
- ☆14May 28, 2025Updated 9 months ago
- Single-Cell Multimodal Prediction via Transformer☆28Feb 7, 2024Updated 2 years ago
- PyTorch implementation of HisToGene☆52Nov 30, 2021Updated 4 years ago
- Identify spatial domain☆90May 29, 2025Updated 9 months ago
- ☆53Apr 26, 2022Updated 3 years ago
- [ICLR 2025] Stem: Gene Expression Inference from Histology Images☆47Apr 15, 2025Updated 11 months ago
- ☆11May 24, 2024Updated last year
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆48Aug 7, 2021Updated 4 years ago
- [PR 2025] Code for UMPIRE☆13Mar 10, 2025Updated last year
- STPath: A Generative Foundation Model for Integrating Spatial Transcriptomics and Whole Slide Images☆40Jul 27, 2025Updated 7 months ago
- ☆83May 13, 2025Updated 10 months ago
- Scalable Generation of Spatial Transcriptomics from Histology Images via Whole-Slide Flow Matching, ICML2025 (Spotlight)☆29Aug 11, 2025Updated 7 months ago
- CAST package☆43Oct 26, 2024Updated last year
- ☆49May 19, 2025Updated 10 months ago
- ☆19Mar 16, 2025Updated last year
- CellNeighborEX: Deciphering Neighbor-Dependent Gene Expression from Spatial Transcriptomics Data☆16Mar 13, 2026Updated last week
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆77May 24, 2024Updated last year
- TISSUE (Transcript Imputation with Spatial Single-cell Uncertainty Estimation) provides tools for estimating well-calibrated uncertainty …☆41Mar 10, 2024Updated 2 years ago
- An offical repo for paper "Single-cells are Spatial Tokens: Transformers for Spatially Resolved Transcriptomics Data Imputation"☆18Aug 11, 2023Updated 2 years ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆41Jul 1, 2024Updated last year
- ☆16Jan 6, 2024Updated 2 years ago
- CVPR 2025: 'ZoomLDM: Latent Diffusion Model for multi-scale image generation'☆31Dec 15, 2025Updated 3 months ago
- High-Resolution Spatial Transcriptomics Using Histology Images with HisToSGE (Pathology Image Large Model, Transformers)☆20Jul 24, 2024Updated last year
- Spatial Experiments raster - a rasterization preprocessing framework for scalable spatial omics data analysis☆19Apr 23, 2025Updated 10 months ago
- ☆26May 16, 2025Updated 10 months ago
- Code for the THItoGene☆28Apr 9, 2025Updated 11 months ago
- Spatial alignment of single cell transcriptomic data.☆358Jul 1, 2025Updated 8 months ago
- Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA☆64Mar 18, 2024Updated 2 years ago
- MorphoDiff is a diffusion based generative pipeline to predict high-resolution cell morphological responses under different conditions ba…☆33Aug 13, 2025Updated 7 months ago
- Cell localization and counting: 1) Exponential Distance Transform Maps for Cell Localization; 2) Multi-scale Hypergraph-based Feature Ali…☆23Apr 10, 2024Updated last year
- Vector representations of gene co-expression in single cell RNAseq.☆36Nov 8, 2025Updated 4 months ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆122Updated this week
- Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.☆101Mar 28, 2024Updated last year
- ☆10May 31, 2022Updated 3 years ago
- Interoperability between SpatialData and the Xenium Explorer☆25Jul 31, 2024Updated last year
- Spatial cellular architecture predicts prognosis in glioblastoma - Nature Communications☆25Dec 11, 2023Updated 2 years ago
- A model developed for the generation of scRNA-seq data☆87Jan 21, 2026Updated last month
- ☆25Aug 1, 2022Updated 3 years ago
- ☆148Mar 19, 2024Updated 2 years ago