zhengli09 / BASSLinks
Bayesian Analytics for Spatial Segmentation
☆30Updated 2 months ago
Alternatives and similar repositories for BASS
Users that are interested in BASS are comparing it to the libraries listed below
Sorting:
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆32Updated 3 months ago
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆59Updated last month
- ☆48Updated last month
- ☆31Updated 4 months ago
- Spatial direct messaging detected by bivariate Moran☆27Updated this week
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆35Updated 5 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆34Updated 4 months ago
- Code used to benchmark Xenium☆64Updated last year
- ☆35Updated 2 months ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆36Updated last year
- ☆57Updated 7 months ago
- ☆59Updated 11 months ago
- Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq☆13Updated last year
- CAST package☆40Updated 8 months ago
- ☆39Updated 2 years ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆27Updated 11 months ago
- scTM: A package for topic modelling in transcriptomics data☆21Updated last year
- Join subcellular Visium HD bins into cells☆112Updated 2 months ago
- ☆53Updated last year
- ☆36Updated last year
- Code companion to the publication "High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spat…☆23Updated last year
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆81Updated last year
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆127Updated 3 weeks ago
- ☆30Updated last year
- Spatial Cellular Estimator for Tumors☆53Updated last month
- Spatial mapping of cell types by integration of transcriptomics data☆93Updated 3 years ago
- Implementation of CellNEST method☆36Updated last week
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆26Updated last month
- ☆11Updated last year
- UniCell Deconvolve - Cloud Cell Type Deconvolution For Transcriptomic Data☆26Updated last year