zhengli09 / BASSLinks
Bayesian Analytics for Spatial Segmentation
☆29Updated last month
Alternatives and similar repositories for BASS
Users that are interested in BASS are comparing it to the libraries listed below
Sorting:
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆35Updated 4 months ago
- ☆48Updated last month
- Code used to benchmark Xenium☆63Updated 11 months ago
- ☆58Updated 11 months ago
- Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq☆13Updated last year
- CAST package☆40Updated 8 months ago
- ☆39Updated 2 years ago
- ☆29Updated 4 months ago
- ☆54Updated 6 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆53Updated last month
- ☆12Updated 2 years ago
- scTM: A package for topic modelling in transcriptomics data☆20Updated last year
- Spatial direct messaging detected by bivariate Moran☆27Updated last month
- ☆28Updated 4 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆34Updated 3 months ago
- Construct Tumor Transition Zone Microenvironment☆45Updated this week
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆36Updated 11 months ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆27Updated 11 months ago
- The benchmarking of spatial transcriptomics deconvolution methods☆32Updated 2 years ago
- Repository for ENACT pipeline for end-to-end analysis of Visium HD data☆52Updated 2 weeks ago
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆32Updated 2 months ago
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆55Updated last week
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 4 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆35Updated 3 weeks ago
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆82Updated 2 weeks ago
- This repository includes codes and data example used in the "Integrative Spatial Analysis Reveals Tumor Heterogeneity and Immune Colon…☆14Updated last month
- UniCell Deconvolve Paper☆10Updated 2 years ago
- Spatial mapping of cell types by integration of transcriptomics data☆93Updated 2 years ago
- overview of spatial datasets☆75Updated last year
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆41Updated last year