Bayesian Analytics for Spatial Segmentation
☆33May 4, 2025Updated last year
Alternatives and similar repositories for BASS
Users that are interested in BASS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆136Feb 11, 2024Updated 2 years ago
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆34Jun 21, 2026Updated 3 months ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆46Feb 19, 2026Updated 7 months ago
- Benchmarking clustering, alignment, and integration methods for spatial transcriptomics☆29Dec 19, 2024Updated last year
- ☆18Nov 24, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆12Dec 17, 2025Updated 9 months ago
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆185Jan 8, 2026Updated 8 months ago
- Spatially aware dimension reduction for spatial transcriptomics.☆68Mar 18, 2025Updated last year
- Single Cell Pretrained Regulatory network INference from Transcripts☆11Sep 17, 2024Updated 2 years ago
- ☆30Jan 4, 2024Updated 2 years ago
- ☆28Jun 4, 2023Updated 3 years ago
- ☆15Jul 26, 2023Updated 3 years ago
- nnSVG: scalable method to identify spatially variable genes (SVGs) in spatially-resolved transcriptomics data☆25Jul 14, 2026Updated 2 months ago
- ☆43Dec 4, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆48May 31, 2024Updated 2 years ago
- an efficient data integration method for multiple spatial transcriptomics data with non- cluster-relevant effects such as the complex batc…☆16Dec 15, 2025Updated 9 months ago
- Identify genes with spatial expression trends in single-cell gene expression data☆51Mar 20, 2018Updated 8 years ago
- scTM: A package for topic modelling in transcriptomics data☆27May 1, 2024Updated 2 years ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆107Dec 11, 2023Updated 2 years ago
- Multi-slice Spatial Transcriptome Domain Analysis.☆12Dec 13, 2024Updated last year
- ☆11Sep 7, 2023Updated 3 years ago
- code and dataset for spatialDWLS☆14Apr 18, 2021Updated 5 years ago
- Code for "Improving Stain Invariance of CNNs for Segmentation by Fusing Channel Attention and Domain-Adversarial Training"☆10Dec 5, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆22Jan 6, 2024Updated 2 years ago
- STAIG: Spatial Transcriptomics Analysis via Image-Aided Graph Contrastive Learning for Deciphering and Alignment-Free Integration☆21Mar 31, 2025Updated last year
- ☆32Aug 2, 2023Updated 3 years ago
- ☆18Mar 18, 2025Updated last year
- ☆16May 6, 2026Updated 4 months ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆87Mar 5, 2022Updated 4 years ago
- Reworked clustering metrics for assessing performance in imbalanced settings☆19Jun 3, 2024Updated 2 years ago
- Reproducible analyses for the NicheCompass manuscript☆15Updated this week
- ☆14Jan 25, 2023Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Identify spatial domain☆92May 29, 2025Updated last year
- ☆44May 11, 2026Updated 4 months ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆160Sep 18, 2026Updated last week
- CellNeighborEX: Deciphering Neighbor-Dependent Gene Expression from Spatial Transcriptomics Data☆15Mar 13, 2026Updated 6 months ago
- FISH Iterative Cell Typing☆11Mar 24, 2024Updated 2 years ago
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆24Apr 8, 2025Updated last year
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆97Jul 4, 2026Updated 2 months ago