zhengli09 / BASSLinks
Bayesian Analytics for Spatial Segmentation
☆30Updated 6 months ago
Alternatives and similar repositories for BASS
Users that are interested in BASS are comparing it to the libraries listed below
Sorting:
- Code used to benchmark Xenium☆71Updated last year
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆63Updated 5 months ago
- ☆50Updated last month
- ☆31Updated 9 months ago
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆33Updated 7 months ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆41Updated 9 months ago
- Detect hierarchical structures in cell-cell communications☆16Updated 10 months ago
- Spatial direct messaging detected by bivariate Moran☆31Updated 4 months ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆39Updated last year
- ☆60Updated last year
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆41Updated 8 months ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 9 months ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆143Updated this week
- scTM: A package for topic modelling in transcriptomics data☆24Updated last year
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆91Updated last year
- Code companion to the publication "High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spat…☆28Updated 2 years ago
- TACCO: Transfer of Annotations to Cells and their COmbinations☆62Updated 2 months ago
- ☆40Updated 3 years ago
- ☆40Updated last month
- Spatially resolved transcriptomic analysis☆61Updated 3 years ago
- CAST package☆41Updated last year
- ☆125Updated last year
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆68Updated 2 weeks ago
- The benchmarking of spatial transcriptomics deconvolution methods☆33Updated 2 years ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆46Updated 4 years ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆28Updated last year
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆70Updated last year
- Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq☆15Updated last month
- Spatial Cellular Estimator for Tumors☆60Updated last week
- ☆56Updated last year