Bayesian Analytics for Spatial Segmentation
☆30May 4, 2025Updated 10 months ago
Alternatives and similar repositories for BASS
Users that are interested in BASS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆130Feb 11, 2024Updated 2 years ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆43Feb 19, 2026Updated last month
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆34Apr 11, 2025Updated 11 months ago
- Benchmarking clustering, alignment, and integration methods for spatial transcriptomics☆24Dec 19, 2024Updated last year
- ☆29Jan 4, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆19Nov 24, 2024Updated last year
- ☆21Aug 2, 2025Updated 7 months ago
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆171Jan 8, 2026Updated 2 months ago
- ☆10Dec 17, 2025Updated 3 months ago
- Single Cell Pretrained Regulatory network INference from Transcripts☆11Sep 17, 2024Updated last year
- ☆27Jun 4, 2023Updated 2 years ago
- ☆15Jul 26, 2023Updated 2 years ago
- Identify genes with spatial expression trends in single-cell gene expression data☆51Mar 20, 2018Updated 8 years ago
- nnSVG: scalable method to identify spatially variable genes (SVGs) in spatially-resolved transcriptomics data☆23May 19, 2025Updated 10 months ago
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- ☆43May 31, 2024Updated last year
- Spatially aware dimension reduction for spatial transcriptomics.☆65Mar 18, 2025Updated last year
- ☆41Dec 4, 2023Updated 2 years ago
- an efficient data integration method for multiple spatial transcriptomics data with non- cluster-relevant effects such as the complex batc…☆12Dec 15, 2025Updated 3 months ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆95Dec 11, 2023Updated 2 years ago
- scTM: A package for topic modelling in transcriptomics data☆24May 1, 2024Updated last year
- code and dataset for spatialDWLS☆14Apr 18, 2021Updated 4 years ago
- ☆14Jan 25, 2023Updated 3 years ago
- Multi-slice Spatial Transcriptome Domain Analysis.☆13Dec 13, 2024Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆76Nov 13, 2025Updated 4 months ago
- ☆10Sep 7, 2023Updated 2 years ago
- ☆31Aug 2, 2023Updated 2 years ago
- ☆17Mar 18, 2025Updated last year
- ☆42Mar 12, 2026Updated 2 weeks ago
- Reworked clustering metrics for assessing performance in imbalanced settings☆18Jun 3, 2024Updated last year
- Identify spatial domain☆90May 29, 2025Updated 9 months ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆82Mar 5, 2022Updated 4 years ago
- Reproducible analyses for the NicheCompass manuscript☆13Jul 3, 2025Updated 8 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- FISH Iterative Cell Typing☆11Mar 24, 2024Updated 2 years ago
- CellNeighborEX: Deciphering Neighbor-Dependent Gene Expression from Spatial Transcriptomics Data☆16Mar 13, 2026Updated 2 weeks ago
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆17Sep 19, 2025Updated 6 months ago
- ☆13Nov 3, 2023Updated 2 years ago
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆267Updated this week
- BANKSY: spatial clustering☆138Oct 15, 2025Updated 5 months ago
- ☆149Mar 19, 2024Updated 2 years ago