zhengli09 / BASS
Bayesian Analytics for Spatial Segmentation
☆25Updated 4 months ago
Alternatives and similar repositories for BASS:
Users that are interested in BASS are comparing it to the libraries listed below
- ☆45Updated 4 months ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆30Updated last month
- ☆37Updated 2 years ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆34Updated this week
- Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq☆11Updated 11 months ago
- Code used to benchmark Xenium☆45Updated 8 months ago
- Spatial direct messaging detected by bivariate Moran☆25Updated last month
- ☆18Updated last week
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆27Updated last year
- CeLEry: cell location recovery in single-cell RNA sequencing☆33Updated 2 weeks ago
- ☆16Updated last week
- Tutorials for the SCOG Virtual Workshop ‘Spatial transcriptomics data analysis in Python’ - May 23-24, 2022☆52Updated 2 years ago
- The benchmarking of spatial transcriptomics deconvolution methods☆29Updated 2 years ago
- Code companion to the publication "High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spat…☆18Updated last year
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆51Updated 5 months ago
- UniCell Deconvolve Paper☆10Updated last year
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆33Updated 8 months ago
- UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference☆26Updated 3 months ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆24Updated 7 months ago
- Spatial Cellular Estimator for Tumors☆48Updated last week
- UniCell Deconvolve - Cloud Cell Type Deconvolution For Transcriptomic Data☆23Updated last year
- CAST package☆30Updated 4 months ago
- ☆40Updated 2 months ago
- ☆53Updated 7 months ago
- SPROD: Spatial expression profiling de-noising☆36Updated last year
- spSeudoMap: cell type mapping of spatial transcriptomics using unmatched single-cell RNA-seq data☆11Updated 5 months ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆39Updated 3 years ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆23Updated last year
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆73Updated last year