YosefLab / HotspotLinks
☆134Updated 7 months ago
Alternatives and similar repositories for Hotspot
Users that are interested in Hotspot are comparing it to the libraries listed below
Sorting:
- A tool for semi-automatic cell type harmonization and integration☆115Updated last month
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆136Updated 9 months ago
- ☆126Updated 3 years ago
- Analysis of cell-cell communication at single-cell resolution☆105Updated last year
- Metacells - Single-cell RNA Sequencing Analysis☆116Updated last year
- ☆84Updated this week
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆117Updated last month
- ☆59Updated last year
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆138Updated 2 years ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆77Updated 2 months ago
- trajectory inference☆105Updated 10 months ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆123Updated 7 months ago
- ☆38Updated 8 months ago
- BANKSY: spatial clustering☆130Updated last month
- ☆128Updated last year
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆79Updated 7 months ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆110Updated 7 months ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆86Updated 2 years ago
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆88Updated 8 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆76Updated 9 months ago
- Spatial mapping of cell types by integration of transcriptomics data☆98Updated 3 years ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆84Updated 2 years ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆81Updated 8 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆67Updated last month
- inferring regulatory cellular dynamics☆60Updated 2 months ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆78Updated 4 months ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆123Updated last week
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆104Updated 5 months ago
- scDIOR: Single cell data IO softwaRe☆150Updated 3 years ago
- Significance analysis for clustering single-cell RNA-sequencing data☆119Updated last year