☆146Mar 20, 2026Updated 3 weeks ago
Alternatives and similar repositories for Hotspot
Users that are interested in Hotspot are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆423Mar 30, 2026Updated last week
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆139Feb 20, 2025Updated last year
- CellRank: dynamics from multi-view single-cell data☆437Updated this week
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆233Mar 17, 2026Updated 3 weeks ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆448Jan 22, 2026Updated 2 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆34Feb 25, 2025Updated last year
- R package implementation of Milo for testing for differential abundance in KNN graphs☆424Sep 4, 2025Updated 7 months ago
- ☆134Apr 24, 2024Updated last year
- End-to-end analysis of spatial multi-omics data☆108Jan 26, 2026Updated 2 months ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆84Mar 19, 2026Updated 3 weeks ago
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆185Updated this week
- Coarse-graining of large single-cell RNA-seq data into metacells☆98Feb 23, 2026Updated last month
- ☆38Nov 26, 2025Updated 4 months ago
- ☆46May 4, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Lineage Tracing by Integrating Mutation and Transcriptomic data☆13Jun 16, 2020Updated 5 years ago
- Python implementation of Gene Trajectory☆30Sep 4, 2024Updated last year
- ☆277Oct 13, 2025Updated 5 months ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆250Jan 16, 2026Updated 2 months ago
- ☆129Mar 27, 2022Updated 4 years ago
- Python package to perform enrichment analysis from omics data.☆265Mar 30, 2026Updated last week
- A tool for semi-automatic cell type classification☆464Mar 21, 2026Updated 2 weeks ago
- Codes used in LISTA project.☆15Apr 17, 2024Updated last year
- Scissor package☆257May 10, 2024Updated last year
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆594Jun 26, 2025Updated 9 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆184Aug 12, 2025Updated 7 months ago
- Spatial Transcriptomics Capture Location Deconvolution☆204Oct 20, 2025Updated 5 months ago
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆427Mar 16, 2026Updated 3 weeks ago
- Gene group activity utility functions for Scanpy☆101Dec 21, 2024Updated last year
- A novel machine learning pipeline to analyse spatial transcriptomics data☆244Mar 12, 2026Updated 3 weeks ago
- SenePy is a set of tools to score single-cells based on their expression of cell-specific senescence markers. Please see the following pu…☆54Jan 30, 2025Updated last year
- An optimal transport-based algorithm for inferring cell trajectories of spatial transcriptomics.☆38Mar 30, 2025Updated last year
- Spatiotemporal modeling of spatial transcriptomics☆333Feb 25, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Hotspot cluster distance analysis in spatial transcriptomic data☆37Feb 10, 2025Updated last year
- SPATA Package for spatial gene expression analysis☆21May 6, 2022Updated 3 years ago
- A tool for semi-automatic cell type harmonization and integration☆120Mar 9, 2026Updated last month
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆174Jan 8, 2026Updated 3 months ago
- Automatically annotate cell types, consistently across samples.☆20Updated this week
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆118Jan 22, 2024Updated 2 years ago
- Code used for muti cellular factor analysis☆16Dec 13, 2023Updated 2 years ago