☆147Mar 20, 2026Updated last month
Alternatives and similar repositories for Hotspot
Users that are interested in Hotspot are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆428Apr 11, 2026Updated 2 weeks ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆141Feb 20, 2025Updated last year
- CellRank: dynamics from multi-view single-cell data☆443Updated this week
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆242Mar 17, 2026Updated last month
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆449Jan 22, 2026Updated 3 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆34Feb 25, 2025Updated last year
- R package implementation of Milo for testing for differential abundance in KNN graphs☆428Apr 23, 2026Updated last week
- ☆137Apr 24, 2024Updated 2 years ago
- SenePy is a set of tools to score single-cells based on their expression of cell-specific senescence markers. Please see the following pu…☆55Jan 30, 2025Updated last year
- End-to-end analysis of spatial multi-omics data☆111Jan 26, 2026Updated 3 months ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆86Mar 19, 2026Updated last month
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆189Updated this week
- Coarse-graining of large single-cell RNA-seq data into metacells☆100Apr 16, 2026Updated 2 weeks ago
- ☆39Nov 26, 2025Updated 5 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆46May 4, 2024Updated last year
- Lineage Tracing by Integrating Mutation and Transcriptomic data☆13Jun 16, 2020Updated 5 years ago
- Python implementation of Gene Trajectory☆30Sep 4, 2024Updated last year
- ☆278Oct 13, 2025Updated 6 months ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆251Jan 16, 2026Updated 3 months ago
- ☆129Mar 27, 2022Updated 4 years ago
- Python package to perform enrichment analysis from omics data.☆266Apr 21, 2026Updated last week
- Codes used in LISTA project.☆15Apr 17, 2024Updated 2 years ago
- Scissor package☆261May 10, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆600Jun 26, 2025Updated 10 months ago
- A tool for semi-automatic cell type classification☆473Mar 21, 2026Updated last month
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆185Aug 12, 2025Updated 8 months ago
- Spatial Transcriptomics Capture Location Deconvolution☆205Oct 20, 2025Updated 6 months ago
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆429Updated this week
- Gene group activity utility functions for Scanpy☆101Dec 21, 2024Updated last year
- A novel machine learning pipeline to analyse spatial transcriptomics data☆245Apr 17, 2026Updated last week
- Spatiotemporal modeling of spatial transcriptomics☆336Feb 25, 2026Updated 2 months ago
- Hotspot cluster distance analysis in spatial transcriptomic data☆37Feb 10, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- SPATA Package for spatial gene expression analysis☆21May 6, 2022Updated 3 years ago
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆176Jan 8, 2026Updated 3 months ago
- A tool for semi-automatic cell type harmonization and integration☆120Mar 9, 2026Updated last month
- Automatically annotate cell types, consistently across samples.☆20Updated this week
- An optimal transport-based algorithm for inferring cell trajectories of spatial transcriptomics.☆40Mar 30, 2025Updated last year
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆121Jan 22, 2024Updated 2 years ago
- Code used for muti cellular factor analysis☆16Dec 13, 2023Updated 2 years ago