Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA
☆65Mar 18, 2024Updated 2 years ago
Alternatives and similar repositories for TESLA
Users that are interested in TESLA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scaling up spatial transcriptomics for large-sized tissues: uncovering cellular-level tissue architecture beyond conventional platforms☆48Oct 22, 2025Updated 7 months ago
- Super-resolved spatial transcriptomics by deep data fusion☆74Mar 30, 2023Updated 3 years ago
- ☆11May 24, 2024Updated 2 years ago
- ☆165Dec 20, 2024Updated last year
- ☆13Sep 30, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆78Jan 17, 2025Updated last year
- ☆13May 28, 2025Updated last year
- ☆22Oct 30, 2022Updated 3 years ago
- SPROD: Spatial expression profiling de-noising☆36Jun 14, 2023Updated 2 years ago
- ☆13Mar 17, 2026Updated 2 months ago
- PyTorch implementation of HisToGene☆54Nov 30, 2021Updated 4 years ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆145Feb 20, 2025Updated last year
- Spot pseudo-Imager on top of histology☆50Dec 12, 2025Updated 5 months ago
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆156Aug 3, 2025Updated 10 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆98Dec 8, 2022Updated 3 years ago
- STHD: probabilistic cell typing of Single spots in whole Transcriptome spatial data with High Definition☆38Apr 30, 2025Updated last year
- ☆14Feb 12, 2026Updated 3 months ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆97Apr 30, 2026Updated last month
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆27Mar 16, 2025Updated last year
- ☆132Feb 11, 2024Updated 2 years ago
- SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph con…☆263Feb 9, 2026Updated 3 months ago
- ☆24Apr 3, 2025Updated last year
- a spatial deconvolution method based on deep learning frameworks, which converts bulk transcriptomes into spatially resolved single-cell …☆136Mar 22, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Code of the paper "DeepSpot: Leveraging Spatial Context for Enhanced Spatial Transcriptomics Prediction from H&E Images"☆12May 12, 2026Updated 3 weeks ago
- Her2 Breast Cancer Project☆102Nov 27, 2022Updated 3 years ago
- ☆20Dec 9, 2021Updated 4 years ago
- Single-cell spatial elucidation through image-augmented graph transformer☆33Jul 7, 2023Updated 2 years ago
- ☆46May 23, 2025Updated last year
- Methods for visualization and analysis of spatially-resolved gene expression☆23Mar 19, 2026Updated 2 months ago
- A novel machine learning pipeline to analyse spatial transcriptomics data☆249May 5, 2026Updated last month
- ☆26Aug 24, 2023Updated 2 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆33Feb 28, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- CellNeighborEX: Deciphering Neighbor-Dependent Gene Expression from Spatial Transcriptomics Data☆16Mar 13, 2026Updated 2 months ago
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆37Apr 2, 2025Updated last year
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆116Jun 9, 2025Updated 11 months ago
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆439Updated this week
- ☆28Apr 15, 2026Updated last month
- ☆10Jul 9, 2024Updated last year
- ☆160Mar 19, 2024Updated 2 years ago