jianhuupenn / TESLALinks
Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA
☆58Updated last year
Alternatives and similar repositories for TESLA
Users that are interested in TESLA are comparing it to the libraries listed below
Sorting:
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆32Updated 3 months ago
- Bayesian Analytics for Spatial Segmentation☆30Updated 3 months ago
- ☆59Updated last year
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆119Updated 2 months ago
- ☆49Updated 2 months ago
- Code used to benchmark Xenium☆64Updated last year
- ☆35Updated 2 months ago
- Super-resolved spatial transcriptomics by deep data fusion☆74Updated 2 years ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆36Updated last year
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 5 months ago
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆64Updated 9 months ago
- ☆40Updated 2 years ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆82Updated last year
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆88Updated last month
- Spatial cellular architecture predicts prognosis in glioblastoma - Nature Communications☆25Updated last year
- domain adaptation of spatial and single-cell transcriptome☆27Updated 10 months ago
- Spatial direct messaging detected by bivariate Moran☆27Updated 2 weeks ago
- spSeudoMap: cell type mapping of spatial transcriptomics using unmatched single-cell RNA-seq data☆13Updated 10 months ago
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆25Updated 4 months ago
- ☆137Updated 7 months ago
- ☆34Updated 2 weeks ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆128Updated last month
- Sub-cellular spatial transcriptomics Cell Segmentation☆66Updated last year
- ☆19Updated 3 years ago
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆59Updated last month
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆37Updated 5 months ago
- ☆11Updated last year
- ☆12Updated 4 months ago
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆69Updated last year
- ☆31Updated 5 months ago