morris-lab / CellTagR
This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.
☆20Updated 2 years ago
Alternatives and similar repositories for CellTagR:
Users that are interested in CellTagR are comparing it to the libraries listed below
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 3 months ago
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- Cluster Identity Predictor (R package implementation)☆19Updated 2 years ago
- ☆12Updated 6 months ago
- Single-cell Orientation Tracing☆21Updated 3 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆54Updated 3 months ago
- ☆16Updated 5 years ago
- ☆18Updated 10 months ago
- Repository for "Effective methods for bulk RNA-seq deconvolution using scRNA-seq and snRNA-seq derived transcriptomes"☆12Updated last year
- ☆29Updated last week
- ☆29Updated last year
- ☆31Updated 5 years ago
- ☆31Updated 9 months ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 2 years ago
- Mosaic single cell data integration using non-overlapping features☆36Updated 2 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆26Updated last month
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆42Updated last year
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Updated 3 years ago
- ☆39Updated 3 years ago
- Inferring CNV data from single cell ATAC seq☆23Updated 11 months ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 2 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆34Updated 3 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆29Updated 2 months ago
- Functions for single cell data analysis☆29Updated 3 years ago
- A tool for removing doublets from single-cell RNA-seq data☆71Updated 4 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆31Updated last year
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆26Updated last year
- Clone identification from single-cell data☆61Updated 2 years ago