morris-lab / CellTagRLinks
This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.
☆21Updated 3 years ago
Alternatives and similar repositories for CellTagR
Users that are interested in CellTagR are comparing it to the libraries listed below
Sorting:
- ☆13Updated last year
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated last year
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆43Updated 3 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- scRNA-seq cell type identification☆43Updated 6 years ago
- Single-cell Case Control Analysis☆52Updated this week
- ☆50Updated 5 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆39Updated 3 years ago
- ☆32Updated 9 months ago
- ☆39Updated last month
- Single-cell Orientation Tracing☆21Updated 3 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- Functions for single cell data analysis☆32Updated 4 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated 2 years ago
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Updated 3 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 4 years ago
- Single cell RNA-seq analysis bundle☆37Updated 6 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- Inferring CNV data from single cell ATAC seq☆24Updated 4 months ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 3 months ago
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆31Updated last month
- A robust and accurate cell type classifier for single cell RNA-seq data☆17Updated 2 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 4 years ago
- ☆41Updated 4 years ago
- ☆34Updated 6 years ago
- ☆17Updated 6 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆43Updated last year
- SCDC☆45Updated 4 months ago