navinlabcode / CellTrekLinks
☆122Updated 3 years ago
Alternatives and similar repositories for CellTrek
Users that are interested in CellTrek are comparing it to the libraries listed below
Sorting:
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆82Updated last year
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆117Updated 10 months ago
- A tool for semi-automatic cell type harmonization and integration☆108Updated 3 months ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆107Updated 2 months ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆74Updated 2 years ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆131Updated 4 months ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆39Updated 3 years ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆76Updated this week
- ☆53Updated 9 months ago
- Analysis of cell-cell communication at single-cell resolution☆101Updated 10 months ago
- Construct Tumor Transition Zone Microenvironment☆46Updated 2 weeks ago
- ☆122Updated last year
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆75Updated 2 months ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆110Updated 2 months ago
- Assessing the purity of single cell population☆130Updated 3 years ago
- ☆116Updated 2 months ago
- Methods to discover gene programs on single-cell data☆127Updated this week
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆109Updated 5 months ago
- ☆44Updated 11 months ago
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆124Updated last year
- Methods to compute Local Inverse Simpson's Index (LISI)☆64Updated 3 years ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆73Updated 5 years ago
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆60Updated last year
- Spatial mapping of cell types by integration of transcriptomics data☆93Updated 3 years ago
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆84Updated last month
- ☆104Updated 4 years ago
- R implementation of GeneTrajectory☆59Updated last year
- Codes for the scPLC project☆67Updated 2 years ago
- BANKSY: spatial clustering☆117Updated 2 weeks ago
- trajectory inference☆104Updated 5 months ago