navinlabcode / CellTrekLinks
☆126Updated 3 years ago
Alternatives and similar repositories for CellTrek
Users that are interested in CellTrek are comparing it to the libraries listed below
Sorting:
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆137Updated 10 months ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆85Updated 2 years ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆87Updated 3 years ago
- Analysis of cell-cell communication at single-cell resolution☆105Updated last year
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆130Updated last year
- A tool for semi-automatic cell type harmonization and integration☆117Updated 2 months ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆40Updated 4 years ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆78Updated 5 months ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆114Updated 8 months ago
- ☆60Updated this week
- Assessing the purity of single cell population☆139Updated 3 years ago
- Spatial Cellular Estimator for Tumors☆60Updated last week
- ☆129Updated last year
- R package for pathway analysis in scRNA-seq data☆76Updated last year
- ☆64Updated 6 years ago
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆119Updated 2 months ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆80Updated 11 months ago
- BANKSY: spatial clustering☆132Updated 2 months ago
- Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease☆97Updated 4 years ago
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆109Updated 7 months ago
- The integration of single cell rank-based gene set enrichment analysis☆140Updated 6 months ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆72Updated 4 years ago
- Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…☆53Updated 4 years ago
- Construct Tumor Transition Zone Microenvironment☆49Updated 6 months ago
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆141Updated 2 years ago
- Codes used in pan-T cell analysis☆64Updated 2 years ago
- R package for Protein activity analysis of single-cell RNAseq.☆85Updated 3 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated 2 years ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆80Updated 8 months ago
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆68Updated last year