☆136Aug 23, 2026Updated last month
Alternatives and similar repositories for CellTrek
Users that are interested in CellTrek are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆152Feb 20, 2025Updated last year
- ☆137Feb 11, 2024Updated 2 years ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆488Jan 22, 2026Updated 8 months ago
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆463Sep 28, 2026Updated last week
- Spatial Transcriptomics Capture Location Deconvolution☆214Oct 20, 2025Updated 11 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆101Dec 8, 2022Updated 3 years ago
- A tool for semi-automatic cell type harmonization and integration☆123Mar 9, 2026Updated 6 months ago
- Spatial Cellular Estimator for Tumors☆66Sep 27, 2026Updated last week
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆60Aug 13, 2026Updated last month
- BANKSY: spatial clustering☆165Sep 29, 2026Updated last week
- Learning cell communication from spatial graphs of cells☆121Jan 15, 2024Updated 2 years ago
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆475Apr 11, 2026Updated 5 months ago
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆31Aug 17, 2022Updated 4 years ago
- Spatial omics analysis toolbox☆392Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆309Jun 16, 2026Updated 3 months ago
- ☆134Nov 17, 2023Updated 2 years ago
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆79Jan 17, 2025Updated last year
- Spatial alignment of single cell transcriptomic data.☆373Jul 1, 2025Updated last year
- A novel machine learning pipeline to analyse spatial transcriptomics data☆259Updated this week
- R package for semi-supervised single-cell data integration☆103Aug 19, 2026Updated last month
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆140Sep 6, 2024Updated 2 years ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆28Jul 13, 2026Updated 2 months ago
- R package to infer biological activities from omics data using a collection of methods.☆311Dec 16, 2025Updated 9 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆165Mar 20, 2026Updated 6 months ago
- Draw phylogenetic trees of tumor evolution☆87Jul 21, 2023Updated 3 years ago
- Quantifying metabolism activity at the single-cell resolution☆197Aug 20, 2026Updated last month
- R package to visualize gene expression data based on weighted kernel density estimation☆116Feb 6, 2026Updated 8 months ago
- Analysis of cell-cell communication at single-cell resolution☆108Sep 10, 2024Updated 2 years ago
- A portable and fast single cell type identifier☆64May 12, 2021Updated 5 years ago
- ☆105May 4, 2026Updated 5 months ago
- ☆10Jul 6, 2024Updated 2 years ago
- A package to help convert different single-cell data formats to each other☆471Feb 20, 2026Updated 7 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Spatial mapping of cell types by integration of transcriptomics data☆103Apr 25, 2026Updated 5 months ago
- CellNeighborEX: Deciphering Neighbor-Dependent Gene Expression from Spatial Transcriptomics Data☆15Mar 13, 2026Updated 6 months ago
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆250May 11, 2026Updated 4 months ago
- Scissor package☆277May 10, 2024Updated 2 years ago
- LIANA: a LIgand-receptor ANalysis frAmework☆252Aug 7, 2024Updated 2 years ago
- ☆54Mar 7, 2023Updated 3 years ago
- Functional Annotation for Single-Cell Transcriptomics☆12Jun 29, 2024Updated 2 years ago