estellad / SpatialExperimentIOLinks
Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.
☆14Updated last month
Alternatives and similar repositories for SpatialExperimentIO
Users that are interested in SpatialExperimentIO are comparing it to the libraries listed below
Sorting:
- A repository for benchmarking spatial deconvolution and mapping tools☆33Updated last month
- Cell-type Relationship Analysis Workflow Done Across Distances☆32Updated 2 weeks ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆20Updated 2 years ago
- ☆39Updated 8 months ago
- R API and htmlwidget for Vitessce☆40Updated 8 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆52Updated 3 weeks ago
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆15Updated last year
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆32Updated last year
- ☆22Updated 2 years ago
- An R package for handling and analysing imaging mass cytometry data☆26Updated this week
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆11Updated last year
- A unified interface to spatial transcriptomics deconvolution tools☆41Updated last month
- Identification of spatial homogeneous regions☆21Updated 5 months ago
- Spatially-resolved Transcriptomics via Epitope Anchoring☆19Updated last year
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆25Updated 5 months ago
- ☆29Updated 2 years ago
- Cell type pipes for R☆51Updated last year
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- ☆12Updated last year
- ☆27Updated 8 months ago
- ☆19Updated last week
- Stitch multiple Visium slides together☆16Updated last year
- Multi-resolution Variational Inference☆22Updated 2 months ago
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- .h5mu files interface for Seurat☆32Updated last year
- SPATA Package for spatial gene expression analysis☆21Updated 3 years ago
- Compute the neighborhood consolidation matrix and identify SHRs☆13Updated last week
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- CAST package☆40Updated 7 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 6 months ago