FridleyLab / spatialGELinks
Methods for visualization and analysis of spatially-resolved gene expression
☆21Updated 3 months ago
Alternatives and similar repositories for spatialGE
Users that are interested in spatialGE are comparing it to the libraries listed below
Sorting:
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 9 months ago
- ☆25Updated 8 months ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆30Updated 2 years ago
- Spatial One☆29Updated last year
- ☆31Updated 9 months ago
- Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information☆22Updated 3 years ago
- An R package for performing cell typing in SMI and other single cell data☆43Updated 6 months ago
- ☆23Updated 2 years ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆37Updated 2 weeks ago
- iterative clustering pipeline of big single cell datasets.☆35Updated 3 months ago
- CAST package☆41Updated last year
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Updated 3 years ago
- ☆14Updated 5 months ago
- ☆53Updated 2 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 6 months ago
- Spatial direct messaging detected by bivariate Moran☆31Updated 4 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆43Updated 3 months ago
- Information-based dimensionality reduction☆29Updated 11 months ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆11Updated 2 years ago
- R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…☆13Updated last year
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Updated last year
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆37Updated 2 years ago
- ☆60Updated 3 months ago
- ☆30Updated 7 months ago
- A toolset for analysis and visualisation of Spatial Transcriptomics datasets.☆18Updated 4 years ago
- R-based Xenium Spatial Analysis Toolkit to assess gene expression gradients☆30Updated 7 months ago
- ☆19Updated last year
- ☆30Updated last year
- Scripts from the GBM cellular states paper☆20Updated 4 years ago
- Custom codes accompanying single cell spatial transcriptomic study on the healthy human lung☆12Updated last year