Methods for visualization and analysis of spatially-resolved gene expression
☆23Oct 16, 2026Updated 2 weeks ago
Alternatives and similar repositories for spatialGE
Users that are interested in spatialGE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Dec 14, 2023Updated 2 years ago
- ☆16Mar 2, 2023Updated 3 years ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆153Feb 20, 2025Updated last year
- An Immunophenotypic and Transcriptomic Human Bone Marrow Atlas☆11Nov 3, 2023Updated 2 years ago
- ☆11Apr 4, 2023Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- CellNeighborEX: Deciphering Neighbor-Dependent Gene Expression from Spatial Transcriptomics Data☆15Mar 13, 2026Updated 7 months ago
- Test genes for Spatial Variation☆15Dec 20, 2024Updated last year
- R package (compatible with SCope) to create generic .loom files and extend them with other data e.g.: SCENIC regulons, Seurat clusters an…☆48Apr 8, 2022Updated 4 years ago
- ☆14Aug 9, 2017Updated 9 years ago
- Analaysis for the batch correction paper☆12Apr 26, 2025Updated last year
- ☆17Sep 28, 2022Updated 4 years ago
- Universal RObust Peak Annotator☆19Dec 19, 2023Updated 2 years ago
- Framework for analysis of cell-types and Ligand-Receptor cooccurrences☆21Feb 13, 2023Updated 3 years ago
- Multiple trajectory alignment of time-series data☆13Oct 14, 2023Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Statistical approach for removing unwanted variation from multiple single-cell datasets☆74Oct 7, 2026Updated 3 weeks ago
- ☆74May 28, 2025Updated last year
- 📺 Discover the latest machine learning / AI courses on YouTube.☆26Nov 26, 2023Updated 2 years ago
- From geospatial to spatial -omics☆106Sep 26, 2026Updated last month
- Projecting RNA measurements onto single cell atlases to extract cell type-specific expression profiles using scProjection☆16Aug 28, 2023Updated 3 years ago
- ☆13Apr 14, 2026Updated 6 months ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆38Feb 14, 2025Updated last year
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆75Jul 9, 2026Updated 3 months ago
- Code repository for the paper "Towards a Comprehensive Evaluation of Dimension Reduction Methods for Data Visualization"☆15Jul 4, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆33May 4, 2025Updated last year
- ☆13Jun 15, 2024Updated 2 years ago
- ☆16Feb 12, 2026Updated 8 months ago
- Hi-C data super-resolution with generative adversarial networks☆14Jul 6, 2021Updated 5 years ago
- This is a pipeline for exploring viruses (ssDNA, dsDNA phage, and giant DNA viruses) and viral diversity in metagenomes.☆18Mar 16, 2026Updated 7 months ago
- Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA☆69Mar 18, 2024Updated 2 years ago
- R package for pathway analysis in scRNA-seq data☆81Aug 17, 2024Updated 2 years ago
- Pipeline to predict off-target binding via probe sequences☆16Mar 13, 2026Updated 7 months ago
- Charting spatial ligand-target activity using Renoir (ligand-taRgEt iNteractions acrOss spatIal topogRaphy)☆23Jun 26, 2026Updated 4 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆84May 24, 2024Updated 2 years ago
- A Python package using Gromov-Wasserstein distance to compare cell shapes☆28Oct 15, 2026Updated 2 weeks ago
- R package for normalisation of spatial transcriptomics data☆21Updated this week
- ☆10Jul 6, 2024Updated 2 years ago
- Identify spatial domain☆92May 29, 2025Updated last year
- Linear trajectory inference for single-cell RNA-seq☆64Nov 26, 2025Updated 11 months ago
- domain adaptation of spatial and single-cell transcriptome☆28Sep 21, 2024Updated 2 years ago