FridleyLab / spatialGE
Methods for visualization and analysis of spatially-resolved gene expression
☆13Updated last week
Related projects ⓘ
Alternatives and complementary repositories for spatialGE
- CAST package☆25Updated 3 weeks ago
- A toolset for analysis and visualisation of Spatial Transcriptomics datasets.☆18Updated 3 years ago
- Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information☆19Updated 2 years ago
- Nonnegative spatial factorization for multivariate count data☆57Updated last year
- ☆21Updated 2 months ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆25Updated last year
- ☆12Updated 2 years ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated 2 months ago
- ☆20Updated 2 years ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆36Updated 2 months ago
- Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…☆19Updated this week
- Image processing pipeline for spatial projects☆15Updated last year
- CeLEry: cell location recovery in single-cell RNA sequencing☆31Updated 6 months ago
- ☆47Updated last year
- ☆20Updated last year
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆45Updated 3 weeks ago
- Spatial direct messaging detected by bivariate Moran☆24Updated last week
- Parse ArchR arrow files to anndata h5ad☆14Updated 11 months ago
- SPatial INtegration of spatially resolved transcriptomics datasets☆14Updated 2 months ago
- Projecting RNA measurements onto single cell atlases to extract cell type-specific expression profiles using scProjection☆13Updated last year
- Spatial Single Cell transcriptomic library☆17Updated 8 months ago
- iterative clustering pipeline of big single cell datasets.☆26Updated last week
- ☆14Updated last month
- Dynamical systems methods for RNA velocity analysis☆23Updated 3 years ago
- Supporting material for publication: "Ovarian cancer mutational processes drive site-specific immune evasion"☆19Updated last year
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆23Updated 8 months ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆24Updated last year
- ☆38Updated last month
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆20Updated 3 months ago
- Mosaic single cell data integration using non-overlapping features☆34Updated 2 years ago