edsgard / trendsceekLinks
Identify genes with spatial expression trends in single-cell gene expression data
☆50Updated 7 years ago
Alternatives and similar repositories for trendsceek
Users that are interested in trendsceek are comparing it to the libraries listed below
Sorting:
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆46Updated 4 years ago
- ☆41Updated 4 years ago
- SCDC☆46Updated 7 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆96Updated 8 months ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 7 months ago
- ☆50Updated 6 years ago
- ☆61Updated 5 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆32Updated last year
- ☆37Updated 9 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆45Updated 3 years ago
- ☆17Updated 6 years ago
- ☆63Updated 5 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆58Updated this week
- Aligning gene expression trajectories of single-cell reference and query systems☆80Updated 5 months ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆86Updated last month
- scWGCNA☆61Updated 3 years ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆63Updated 3 years ago
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆41Updated 4 years ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆36Updated 2 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆48Updated last year
- R package for robust clustering of single cell RNA sequencing data☆36Updated last year
- ☆53Updated 2 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆92Updated last month
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆34Updated 2 weeks ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- Single-cell Case Control Analysis☆52Updated this week
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆46Updated 2 years ago