YMa-lab / CARD
☆115Updated last year
Alternatives and similar repositories for CARD:
Users that are interested in CARD are comparing it to the libraries listed below
- ☆116Updated 3 years ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆124Updated 2 months ago
- A tool for semi-automatic cell type harmonization and integration☆102Updated 3 weeks ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆143Updated 3 months ago
- ☆101Updated 4 years ago
- Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease☆93Updated 3 years ago
- Data processing and analysis related code associated with the study "A single-cell and spatially resolved atlas of human breast cancers".☆113Updated 6 months ago
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆103Updated 7 months ago
- Significance analysis for clustering single-cell RNA-sequencing data☆115Updated 7 months ago
- BANKSY: spatial clustering☆103Updated last month
- The integration of single cell rank-based gene set enrichment analysis☆122Updated 8 months ago
- Spatial transcriptomics of heart tissue☆82Updated last year
- Methods to discover gene programs on single-cell data☆109Updated last month
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆79Updated last month
- Quantifying metabolism activity at the single-cell resolution☆132Updated 8 months ago
- Assessing the purity of single cell population☆122Updated 2 years ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆136Updated 3 weeks ago
- Scissor package☆214Updated 11 months ago
- scDIOR: Single cell data IO softwaRe☆140Updated 3 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆99Updated last year
- Spatial mapping of cell types by integration of transcriptomics data☆91Updated 2 years ago
- reticulate-free single cell format conversion☆140Updated 4 months ago
- This repository contains the code used to generate figures and perform analysis for the manuscript titled "Transcriptomic and Spatial Pro…☆75Updated 6 months ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆72Updated 5 months ago
- Join subcellular Visium HD bins into cells☆92Updated 4 months ago
- An open source and flexible pipeline to analysis high-throughput DNBelab C Series single-cell RNA datasets☆89Updated this week
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆55Updated 11 months ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆158Updated 3 weeks ago
- A package for automated processing of single cell RNA-seq data in cancer☆107Updated 5 months ago
- Single-cell disease relevance score (scDRS)☆127Updated 6 months ago