YMa-lab / CARDLinks
☆129Updated last year
Alternatives and similar repositories for CARD
Users that are interested in CARD are comparing it to the libraries listed below
Sorting:
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆138Updated 11 months ago
- ☆129Updated 3 years ago
- Join subcellular Visium HD bins into cells☆132Updated 2 months ago
- BANKSY: spatial clustering☆134Updated 3 months ago
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆109Updated 7 months ago
- Data processing and analysis related code associated with the study "A single-cell and spatially resolved atlas of human breast cancers".☆125Updated last year
- A tool for semi-automatic cell type harmonization and integration☆117Updated 2 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆179Updated 5 months ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆88Updated 3 years ago
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆88Updated last week
- Tutorials for the SCOG Virtual Workshop ‘Spatial transcriptomics data analysis in Python’ - May 23-24, 2022☆53Updated 3 years ago
- Spatial mapping of cell types by integration of transcriptomics data☆100Updated 3 years ago
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆131Updated last year
- ☆128Updated last year
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆143Updated 2 years ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆176Updated 10 months ago
- Significance analysis for clustering single-cell RNA-sequencing data☆123Updated last year
- Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease☆96Updated 4 years ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆149Updated last week
- ☆144Updated 9 months ago
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆153Updated 5 months ago
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆120Updated 3 months ago
- Methods to discover gene programs on single-cell data☆172Updated 4 months ago
- scDIOR: Single cell data IO softwaRe☆153Updated 3 years ago
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆170Updated 3 years ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆127Updated 8 months ago
- The integration of single cell rank-based gene set enrichment analysis☆143Updated 2 weeks ago
- Assessing the purity of single cell population☆140Updated 3 years ago
- Quantifying metabolism activity at the single-cell resolution☆150Updated 7 months ago
- A Bayesian model for compositional single-cell data analysis☆187Updated 2 weeks ago