☆137Feb 11, 2024Updated 2 years ago
Alternatives and similar repositories for CARD
Users that are interested in CARD are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Bayesian Analytics for Spatial Segmentation☆33May 4, 2025Updated last year
- ☆136Aug 23, 2026Updated last month
- ☆18Nov 24, 2024Updated last year
- Spatial Transcriptomics Capture Location Deconvolution☆214Oct 20, 2025Updated 11 months ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆488Jan 22, 2026Updated 8 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆79Jan 17, 2025Updated last year
- BANKSY: spatial clustering☆166Sep 29, 2026Updated last week
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆34Jun 21, 2026Updated 3 months ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆40Jan 13, 2026Updated 8 months ago
- The benchmarking of spatial transcriptomics deconvolution methods☆34Feb 24, 2023Updated 3 years ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆47Feb 19, 2026Updated 7 months ago
- Spatial alignment of single cell transcriptomic data.☆373Jul 1, 2025Updated last year
- Spatial omics analysis toolbox☆392Updated this week
- Gene group activity utility functions for Scanpy☆118Dec 21, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Scissor package☆277May 10, 2024Updated 2 years ago
- ☆54Mar 7, 2023Updated 3 years ago
- Cell type prioritization in single-cell data☆151Mar 26, 2026Updated 6 months ago
- An R package for fast topic inference to identify tissue architecture in multiplexed images☆18Jun 5, 2026Updated 4 months ago
- LIANA: a LIgand-receptor ANalysis frAmework☆252Aug 7, 2024Updated 2 years ago
- A tool for semi-automatic cell type harmonization and integration☆123Mar 9, 2026Updated 7 months ago
- Multi-subject Single Cell Deconvolution☆315Mar 4, 2024Updated 2 years ago
- ☆139Jun 10, 2022Updated 4 years ago
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆160Aug 3, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆463Sep 28, 2026Updated last week
- NicheNet: predict active ligand-target links between interacting cells☆681Sep 25, 2026Updated 2 weeks ago
- Spatial Cellular Estimator for Tumors☆66Sep 27, 2026Updated 2 weeks ago
- The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This al…☆44Feb 5, 2026Updated 8 months ago
- a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution☆56Aug 11, 2025Updated last year
- ☆12Aug 16, 2022Updated 4 years ago
- A novel machine learning pipeline to analyse spatial transcriptomics data☆260Updated this week
- ☆146Jun 25, 2026Updated 3 months ago
- R package for pathway analysis in scRNA-seq data☆82Aug 17, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆28Jun 4, 2023Updated 3 years ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆152Feb 20, 2025Updated last year
- scGSVA: Perform GSVA for single cell RNA seq☆87Sep 5, 2026Updated last month
- SPROD: Spatial expression profiling de-noising☆36Jun 14, 2023Updated 3 years ago
- scTM: A package for topic modelling in transcriptomics data☆27May 1, 2024Updated 2 years ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆345Nov 1, 2022Updated 3 years ago
- Scaling up spatial transcriptomics for large-sized tissues: uncovering cellular-level tissue architecture beyond conventional platforms☆51Oct 22, 2025Updated 11 months ago