YMa-lab / CARDLinks
☆120Updated last year
Alternatives and similar repositories for CARD
Users that are interested in CARD are comparing it to the libraries listed below
Sorting:
- ☆121Updated 3 years ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆129Updated 4 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆147Updated 5 months ago
- BANKSY: spatial clustering☆112Updated last week
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆151Updated 2 months ago
- A tool for semi-automatic cell type harmonization and integration☆107Updated 3 months ago
- Scissor package☆222Updated last year
- Join subcellular Visium HD bins into cells☆111Updated last month
- ☆104Updated 4 years ago
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆84Updated 3 months ago
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆159Updated 2 years ago
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆116Updated 9 months ago
- Spatial mapping of cell types by integration of transcriptomics data☆93Updated 2 years ago
- Methods to discover gene programs on single-cell data☆124Updated last week
- scDIOR: Single cell data IO softwaRe☆141Updated 3 years ago
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆80Updated 2 weeks ago
- ☆118Updated last year
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆162Updated 2 months ago
- The integration of single cell rank-based gene set enrichment analysis☆124Updated 11 months ago
- Assessing the purity of single cell population☆129Updated 3 years ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆139Updated 3 years ago
- Quantifying metabolism activity at the single-cell resolution☆136Updated 10 months ago
- Spatial transcriptomics of heart tissue☆87Updated last year
- reticulate-free single cell format conversion☆160Updated 6 months ago
- Data processing and analysis related code associated with the study "A single-cell and spatially resolved atlas of human breast cancers".☆114Updated 9 months ago
- Spatial Transcriptomics Capture Location Deconvolution☆185Updated last month
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆126Updated this week
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆203Updated last year
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆109Updated 5 months ago
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆124Updated last year