livnatje / DIALOGUE

Related projects ⓘ

Alternatives and complementary repositories for DIALOGUE

• emdann / milopy
  Python implementation of Milo for differential abundance testing on KNN graph
  ☆60Updated last year
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆59Updated 6 months ago
• navinlabcode / CellTrek
  ☆107Updated 2 years ago
• earmingol / cell2cell
  User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
  ☆56Updated 4 months ago
• LungCellAtlas / HLCA_reproducibility
  This repository contains all code used for the Human Lung Cell Atlas project.
  ☆44Updated last year
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆48Updated last month
• theislab / scib-pipeline
  Snakemake pipeline that works with the scIB package to benchmark data integration methods.
  ☆66Updated last year
• tanaylab / metacells
  Metacells - Single-cell RNA Sequencing Analysis
  ☆95Updated last month
• CSOgroup / cellcharter
  A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.
  ☆85Updated last week
• SCCAF / sccaf
  Single-Cell Clustering Assessment Framework
  ☆91Updated last year
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆56Updated 3 months ago
• dpeerlab / SEACells
  SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data
  ☆145Updated 4 months ago
• martinjzhang / scDRS
  Single-cell disease relevance score (scDRS)
  ☆113Updated 3 weeks ago
• rargelaguet / mouse_organogenesis_10x_multiome_publication
  Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
  ☆40Updated 2 years ago
• SONGDONGYUAN1994 / scDesign3
  scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics
  ☆83Updated this week
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆54Updated last year
• zhengrongbin / MEBOCOST
  A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data
  ☆64Updated this week
• drieslab / awesome-spatial-data-analysis
  Awesome list of tools and methods to perform spatial transcriptomic data analysis.
  ☆38Updated 3 years ago
• immunogenomics / symphony
  Efficient and precise single-cell reference atlas mapping with Symphony
  ☆99Updated last year
• quadbio / Pando
  Multiome GRN inference.
  ☆110Updated 6 months ago
• saezlab / visium_heart
  Spatial transcriptomics of heart tissue
  ☆72Updated last year
• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆62Updated 10 months ago
• immunogenomics / LISI
  Methods to compute Local Inverse Simpson's Index (LISI)
  ☆58Updated 3 years ago
• rajewsky-lab / novosparc
  ☆126Updated 11 months ago
• welch-lab / MultiVelo
  Multi-omic velocity inference
  ☆107Updated 2 weeks ago
• Single-Cell-Genomics-Group-CNAG-CRG / Tumor-Immune-Cell-Atlas
  Code repository for the Tumor Immune Cell Atlas (TICA) project
  ☆61Updated 2 years ago
• digitalcytometry / cytospace
  CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data
  ☆115Updated 6 months ago
• changwn / scFEA
  single cell Flux Estimation Analysis (scFEA) Try the below web server!
  ☆99Updated last year
• KlugerLab / GeneTrajectory
  R implementation of GeneTrajectory
  ☆48Updated 7 months ago
• BlishLab / scriabin
  Analysis of cell-cell communication at single-cell resolution
  ☆96Updated last month