DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map the cell transcriptome as a function of its environment.
☆127Jan 22, 2024Updated 2 years ago
Alternatives and similar repositories for DIALOGUE
Users that are interested in DIALOGUE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Analysis of cell-cell communication at single-cell resolution☆108Sep 10, 2024Updated 2 years ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆205Aug 12, 2025Updated last year
- R package implementation of Milo for testing for differential abundance in KNN graphs☆450Aug 25, 2026Updated 2 months ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆153Feb 20, 2025Updated last year
- LIANA: a LIgand-receptor ANalysis frAmework☆253Aug 7, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆161Aug 3, 2025Updated last year
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆208Jan 30, 2026Updated 9 months ago
- ☆168Mar 20, 2026Updated 7 months ago
- Scissor package☆280May 10, 2024Updated 2 years ago
- ☆152Jun 25, 2026Updated 4 months ago
- R package to visualize gene expression data based on weighted kernel density estimation☆115Feb 6, 2026Updated 9 months ago
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆466Updated this week
- Spatial omics analysis toolbox☆395Updated this week
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆80Sep 20, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆61Aug 13, 2026Updated 2 months ago
- Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome☆233Feb 4, 2026Updated 9 months ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆492Updated this week
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆102Apr 30, 2026Updated 6 months ago
- Reference mapping for single-cell genomics☆414Jun 26, 2026Updated 4 months ago
- Identifying cell subpopulational differences among single-cell biospecimens☆17Sep 27, 2024Updated 2 years ago
- Cell type prioritization in single-cell data☆154Mar 26, 2026Updated 7 months ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆319Jun 17, 2025Updated last year
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆68Apr 14, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆789Jan 6, 2024Updated 2 years ago
- Framework for sensitive DE testing (using neighbourhoods)☆78Nov 11, 2025Updated 11 months ago
- This is the alpha version of the CellOracle package☆507Apr 30, 2026Updated 6 months ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆87Jul 25, 2025Updated last year
- R package for pathway analysis in scRNA-seq data☆81Aug 17, 2024Updated 2 years ago
- Quantifying experimental perturbations at single cell resolution☆118Sep 27, 2024Updated 2 years ago
- Interpretation of cell states using reference single-cell maps☆330Dec 19, 2025Updated 10 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆94Oct 11, 2026Updated 3 weeks ago
- ☆33Apr 12, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆484Apr 11, 2026Updated 6 months ago
- Multiview Intercellular SpaTial modeling framework☆74Jan 15, 2026Updated 9 months ago
- A tool for detecting somatic variants in single cell data☆229Sep 15, 2024Updated 2 years ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆244Mar 2, 2026Updated 8 months ago
- A package to help convert different single-cell data formats to each other☆470Feb 20, 2026Updated 8 months ago
- Probability Model of Accessible Chromatin of Single cells☆11Aug 14, 2026Updated 2 months ago
- Efficiently compute robust markers across single-cell datasets☆13Apr 21, 2021Updated 5 years ago