Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information
☆24Sep 30, 2022Updated 3 years ago
Alternatives and similar repositories for CCI
Users that are interested in CCI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆13Jan 10, 2024Updated 2 years ago
- ☆145Jun 25, 2026Updated 2 months ago
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆79Jan 17, 2025Updated last year
- ☆23Sep 20, 2022Updated 4 years ago
- Tools for generating single-cell gene expression data☆34Jun 20, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆35Aug 16, 2021Updated 5 years ago
- LaTeX template of graduate Thesis [University of Chinese Academy of Sciences]☆12Nov 7, 2017Updated 8 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆36Sep 14, 2026Updated last week
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Sep 21, 2024Updated 2 years ago
- Custom codes accompanying single cell spatial transcriptomic study on the healthy human lung☆15Dec 27, 2023Updated 2 years ago
- Single Cell RNA PolyA Site Discovery☆11Jul 27, 2026Updated last month
- CellNeighborEX: Deciphering Neighbor-Dependent Gene Expression from Spatial Transcriptomics Data☆15Mar 13, 2026Updated 6 months ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆42Nov 18, 2025Updated 10 months ago
- ☆19Jun 15, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Linear trajectory inference for single-cell RNA-seq☆63Nov 26, 2025Updated 9 months ago
- Ensemble Learning for Harmonization and Annotation of Single Cells (ELeFHAnt) provides an easy to use R package for users to annotate clu…☆24Jul 18, 2022Updated 4 years ago
- Code related to scRNA analysis using the scAmpi workflow☆26Jun 24, 2026Updated 3 months ago
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆21Jul 7, 2022Updated 4 years ago
- ☆13Dec 14, 2023Updated 2 years ago
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆45Oct 10, 2025Updated 11 months ago
- Statistical analysis for spatial omics data☆11Jul 30, 2022Updated 4 years ago
- spatial transcriptome, single cell☆77Mar 18, 2023Updated 3 years ago
- scLearn：Learning for single cell assignment☆35Dec 13, 2024Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- k-NN-based mapping of cells across representations to transfer labels, embeddings, and expression values.☆16Updated this week
- ☆14Aug 9, 2017Updated 9 years ago
- ☆12Sep 7, 2023Updated 3 years ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Jan 11, 2023Updated 3 years ago
- Segmentation error aware clustering for multiplexed imaging☆19Jan 9, 2025Updated last year
- Cluster Identity Predictor (R package implementation)☆22Aug 13, 2026Updated last month
- The Open Pediatric Cancer Project, maintained at Children's National☆15Updated this week
- mutation(barcode) caller for 10x single cell data☆44Jun 14, 2020Updated 6 years ago
- Analysis of cell-cell communication at single-cell resolution☆108Sep 10, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- S-LDSC scripts for use on MR server.☆10Sep 23, 2021Updated 5 years ago
- ☆30Jul 1, 2026Updated 2 months ago
- Framework for analysis of cell-types and Ligand-Receptor cooccurrences☆21Feb 13, 2023Updated 3 years ago
- ☆19Oct 26, 2021Updated 4 years ago
- ☆14Mar 17, 2022Updated 4 years ago
- Single cell proteomics data processing☆33Sep 6, 2026Updated 2 weeks ago
- ☆47Jul 24, 2025Updated last year