Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information
☆23Sep 30, 2022Updated 3 years ago
Alternatives and similar repositories for CCI
Users that are interested in CCI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆13Jan 10, 2024Updated 2 years ago
- ☆141Jun 25, 2026Updated last month
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆79Jan 17, 2025Updated last year
- ☆23Sep 20, 2022Updated 3 years ago
- Tools for generating single-cell gene expression data☆34Jun 20, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆31Aug 16, 2021Updated 4 years ago
- LaTeX template of graduate Thesis [University of Chinese Academy of Sciences]☆12Nov 7, 2017Updated 8 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆36Jul 2, 2026Updated 3 weeks ago
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Sep 21, 2024Updated last year
- Custom codes accompanying single cell spatial transcriptomic study on the healthy human lung☆15Dec 27, 2023Updated 2 years ago
- Single Cell RNA PolyA Site Discovery☆11Updated this week
- CellNeighborEX: Deciphering Neighbor-Dependent Gene Expression from Spatial Transcriptomics Data☆16Mar 13, 2026Updated 4 months ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆42Nov 18, 2025Updated 8 months ago
- ☆19Jun 15, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Linear trajectory inference for single-cell RNA-seq☆63Nov 26, 2025Updated 7 months ago
- Code related to scRNA analysis using the scAmpi workflow☆28Jun 24, 2026Updated last month
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆21Jul 7, 2022Updated 4 years ago
- Ensemble Learning for Harmonization and Annotation of Single Cells (ELeFHAnt) provides an easy to use R package for users to annotate clu…☆24Jul 18, 2022Updated 4 years ago
- ☆13Dec 14, 2023Updated 2 years ago
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆45Oct 10, 2025Updated 9 months ago
- Statistical analysis for spatial omics data☆11Jul 30, 2022Updated 3 years ago
- spatial transcriptome, single cell☆76Mar 18, 2023Updated 3 years ago
- scLearn：Learning for single cell assignment☆35Dec 13, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- k-NN-based mapping of cells across representations to transfer labels, embeddings, and expression values.☆16Updated this week
- ☆14Aug 9, 2017Updated 8 years ago
- ☆12Sep 7, 2023Updated 2 years ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆26Jan 11, 2023Updated 3 years ago
- Segmentation error aware clustering for multiplexed imaging☆19Jan 9, 2025Updated last year
- Cluster Identity Predictor (R package implementation)☆22Mar 8, 2022Updated 4 years ago
- The Open Pediatric Cancer Project, maintained at Children's National☆15Jun 29, 2026Updated 3 weeks ago
- mutation(barcode) caller for 10x single cell data☆44Jun 14, 2020Updated 6 years ago
- Analysis of cell-cell communication at single-cell resolution☆107Sep 10, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- S-LDSC scripts for use on MR server.☆10Sep 23, 2021Updated 4 years ago
- ☆30Jul 1, 2026Updated 3 weeks ago
- Framework for analysis of cell-types and Ligand-Receptor cooccurrences☆21Feb 13, 2023Updated 3 years ago
- ☆19Oct 26, 2021Updated 4 years ago
- ☆14Mar 17, 2022Updated 4 years ago
- Single cell proteomics data processing☆33Updated this week
- Classification of Single cells by Transfer Learning☆11Oct 11, 2025Updated 9 months ago