YiLab-SC / scHolographyLinks
☆11Updated last year
Alternatives and similar repositories for scHolography
Users that are interested in scHolography are comparing it to the libraries listed below
Sorting:
- Code for the spatial transcriptomic paper on IPF lungs☆20Updated last year
- ☆20Updated 4 years ago
- Code related to Shiao, Gouin III, Ing, et al, Cancer Cell 2023.☆13Updated 2 years ago
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆31Updated last year
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆54Updated last year
- ☆34Updated 3 months ago
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆31Updated 3 years ago
- Publically accessible code for DIISCO method☆12Updated 3 months ago
- scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells…☆17Updated last month
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Updated 11 months ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Updated 11 months ago
- ☆33Updated 11 months ago
- ☆22Updated 2 years ago
- ☆30Updated 9 months ago
- ☆33Updated last year
- Scanner of specific spatial patterns in tissues☆14Updated 3 years ago
- A computational tool for identification of 3D multi-modal spatial neighborhoods☆15Updated 6 months ago
- scRNA-seq analysis of EENT-ONB☆22Updated 2 years ago
- ☆23Updated 2 weeks ago
- Construct Tumor Transition Zone Microenvironment☆53Updated 7 months ago
- ☆17Updated 2 years ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆14Updated last year
- This repository includes codes and data example used in the "Integrative Spatial Analysis Reveals Tumor Heterogeneity and Immune Colon…☆16Updated 8 months ago
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆34Updated 9 months ago
- HCC single cell analysis for Alvarez, Benhammou et al.☆17Updated 3 years ago
- ☆25Updated 2 years ago
- Spatial transcriptomics of heart tissue☆28Updated 3 years ago
- ☆10Updated last year
- ☆16Updated last year
- Cross-modal Identification of Tertiary Lymphoid Structures☆23Updated last year