yzf072 / spaTrackLinks
An optimal transport-based algorithm for inferring cell trajectories of spatial transcriptomics.
☆35Updated 10 months ago
Alternatives and similar repositories for spaTrack
Users that are interested in spaTrack are comparing it to the libraries listed below
Sorting:
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated 4 months ago
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆28Updated last year
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆41Updated last year
- ☆32Updated 11 months ago
- ☆32Updated 6 months ago
- a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution☆50Updated 5 months ago
- The benchmarking of spatial transcriptomics deconvolution methods☆34Updated 2 years ago
- ☆46Updated last year
- Publically accessible code for DIISCO method☆12Updated 3 months ago
- Deep fusion of spatial transcriptomics and histology images for interpretable high-definition embedding mapping☆16Updated 3 weeks ago
- Detect hierarchical structures in cell-cell communications☆16Updated last year
- CAST package☆42Updated last year
- ☆22Updated 3 months ago
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆34Updated 9 months ago
- ☆26Updated 9 months ago
- ☆43Updated 8 months ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆41Updated 11 months ago
- ☆52Updated 3 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆46Updated 5 months ago
- Flow2Spatial reconstructs spatial proteomics through transfer learning.☆23Updated 8 months ago
- Python implementation of Gene Trajectory☆30Updated last year
- StereoMM is a graph fusion model that can integrate gene expression, histological images, and spatial location. And the information inter…☆38Updated last month
- ☆60Updated last year
- ☆40Updated 7 months ago
- ☆40Updated 3 years ago
- ☆34Updated 3 months ago
- ☆30Updated 8 months ago
- Spatial direct messaging detected by bivariate Moran☆32Updated 6 months ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆26Updated 2 years ago
- Axolotl Regenerative Telencehpalon Interpretation via Spatiotemporal Transcriptomic Atlas☆21Updated 3 years ago