Alternatives and similar repositories for spaTrack:

Users that are interested in spaTrack are comparing it to the libraries listed below

• tabdelaal / SpaGE
  Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data
  ☆34Updated 9 months ago
• QuKunLab / MultiomeBenchmarking
  ☆43Updated last month
• JinmiaoChenLab / SpatialGlue
  SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.
  ☆55Updated 10 months ago
• dpeerlab / ENVI
  ☆47Updated 3 weeks ago
• kimmo1019 / scDEC
  Simultaneous deep generative modeling and clustering of single cell genomic data
  ☆32Updated 2 years ago
• WPZgithub / CEFCON
  Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data
  ☆23Updated 6 months ago
• QihuangZhang / CeLEry
  CeLEry: cell location recovery in single-cell RNA sequencing
  ☆34Updated 2 months ago
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆26Updated 3 months ago
• CostaLab / scMEGA
  scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
  ☆38Updated 7 months ago
• LiHongCSBLab / SOAPy
  ☆27Updated 2 months ago
• wanglab-broad / CAST
  CAST package
  ☆34Updated 6 months ago
• tanlabcode / CytoCommunity
  The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains
  ☆27Updated 2 weeks ago
• mexchy1000 / CellDART
  domain adaptation of spatial and single-cell transcriptome
  ☆26Updated 7 months ago
• hongleir / SpaceFlow
  ☆27Updated last year
• bioinfo-biols / Flow2Spatial
  Flow2Spatial reconstructs spatial proteomics through transfer learning.
  ☆14Updated last month
• kunwang34 / PhyloVelo
  PhyloVelo, Phylogeny-based transcriptomic velocity of single cells
  ☆43Updated last year
• Su-informatics-lab / DSTG
  Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence
  ☆38Updated 2 years ago
• marvinquiet / Cellcano
  Supervised cell type identification for scATAC-seq data
  ☆13Updated last year
• DongqingSun96 / STRIDE
  STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …
  ☆18Updated 2 years ago
• ma-compbio / GAGE-seq
  Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq
  ☆13Updated last year
• xiaoyeye / TFvelo
  ☆44Updated 11 months ago
• YangLabHKUST / Portal
  Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets
  ☆30Updated last year
• Banovich-Lab / Spatial_PF
  ☆24Updated 2 months ago
• shuxiaoc / mario-py
  MARIO: single-cell proteomic data matching and integration using both shared and distinct features
  ☆23Updated last year
• raphael-group / CalicoST
  Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics
  ☆34Updated last week
• romain-lopez / DestVI-reproducibility
  Reproducing the experiments of the DestVI paper
  ☆18Updated 3 years ago
• ZJUFanLab / scSpace
  an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…
  ☆22Updated last year
• ZJUFanLab / scNiche
  a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution
  ☆26Updated 2 months ago
• BGI-DEV-REG / ARTISTA
  Axolotl Regenerative Telencehpalon Interpretation via Spatiotemporal Transcriptomic Atlas
  ☆19Updated 2 years ago
• bwalker1 / NeST
  ☆13Updated last year