yzf072 / spaTrackLinks
An optimal transport-based algorithm for inferring cell trajectories of spatial transcriptomics.
☆26Updated 2 months ago
Alternatives and similar repositories for spaTrack
Users that are interested in spaTrack are comparing it to the libraries listed below
Sorting:
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆24Updated 8 months ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆36Updated 11 months ago
- Flow2Spatial reconstructs spatial proteomics through transfer learning.☆18Updated last month
- ☆12Updated 2 years ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆30Updated last year
- ☆47Updated 3 months ago
- ☆48Updated last month
- ☆13Updated 2 weeks ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last year
- CAST package☆40Updated 8 months ago
- Spatial direct messaging detected by bivariate Moran☆27Updated last month
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 4 months ago
- StereoMM is a graph fusion model that can integrate gene expression, histological images, and spatial location. And the information inter…☆35Updated last month
- Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq☆13Updated last year
- SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.☆62Updated last year
- ☆27Updated 2 weeks ago
- domain adaptation of spatial and single-cell transcriptome☆27Updated 9 months ago
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆32Updated 2 months ago
- Spatial Transcriptomic Analysis of OSCC samples☆25Updated 2 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆39Updated 9 months ago
- Simultaneous deep generative modeling and clustering of single cell genomic data☆32Updated 2 years ago
- ☆29Updated last year
- ☆20Updated last week
- Axolotl Regenerative Telencehpalon Interpretation via Spatiotemporal Transcriptomic Atlas☆19Updated 2 years ago
- ☆29Updated 4 months ago
- The benchmarking of spatial transcriptomics deconvolution methods☆32Updated 2 years ago
- ☆28Updated 4 months ago
- ☆16Updated last year
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆14Updated last year
- ☆45Updated 2 years ago