digitalcytometry / cytospaceLinks
CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data
☆133Updated 8 months ago
Alternatives and similar repositories for cytospace
Users that are interested in cytospace are comparing it to the libraries listed below
Sorting:
- A tool for semi-automatic cell type harmonization and integration☆111Updated 7 months ago
- Spatial mapping of cell types by integration of transcriptomics data☆95Updated 3 years ago
- ☆125Updated 3 years ago
- BANKSY: spatial clustering☆124Updated last week
- ☆126Updated last year
- Join subcellular Visium HD bins into cells☆126Updated this week
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆98Updated 4 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆166Updated 2 months ago
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆133Updated last year
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆117Updated this week
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆168Updated 6 months ago
- Metacells - Single-cell RNA Sequencing Analysis☆113Updated last year
- ☆127Updated 6 months ago
- ☆83Updated this week
- Repository for ENACT pipeline for end-to-end analysis of Visium HD data☆65Updated 4 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆74Updated 8 months ago
- A Bayesian model for compositional single-cell data analysis☆177Updated 2 years ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆139Updated last week
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆127Updated last year
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆174Updated 6 months ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆79Updated 3 months ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆81Updated 2 years ago
- Spatial transcriptomics of heart tissue☆96Updated 2 years ago
- Analysis of cell-cell communication at single-cell resolution☆104Updated last year
- Methods to discover gene programs on single-cell data☆155Updated last month
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆146Updated 2 months ago
- R implementation of GeneTrajectory☆65Updated last year
- Significance analysis for clustering single-cell RNA-sequencing data☆119Updated last year
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆66Updated 3 weeks ago
- Tutorials for the SCOG Virtual Workshop ‘Spatial transcriptomics data analysis in Python’ - May 23-24, 2022☆53Updated 3 years ago