CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data
☆152Feb 20, 2025Updated last year
Alternatives and similar repositories for cytospace
Users that are interested in cytospace are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆136Aug 23, 2026Updated last month
- ☆146Jun 25, 2026Updated 3 months ago
- ☆165Mar 20, 2026Updated 6 months ago
- BANKSY: spatial clustering☆166Sep 29, 2026Updated last week
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆463Sep 28, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆125Jan 22, 2024Updated 2 years ago
- ☆16Sep 29, 2023Updated 3 years ago
- Spatial alignment of single cell transcriptomic data.☆373Jul 1, 2025Updated last year
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆133May 29, 2025Updated last year
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆83May 24, 2024Updated 2 years ago
- A tool for semi-automatic cell type harmonization and integration☆123Mar 9, 2026Updated 7 months ago
- R implementation of GeneTrajectory☆72May 9, 2026Updated 5 months ago
- Analysis of cell-cell communication at single-cell resolution☆108Sep 10, 2024Updated 2 years ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆38Feb 14, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆91Mar 19, 2026Updated 6 months ago
- CellNeighborEX: Deciphering Neighbor-Dependent Gene Expression from Spatial Transcriptomics Data☆15Mar 13, 2026Updated 6 months ago
- a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution☆56Aug 11, 2025Updated last year
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆488Jan 22, 2026Updated 8 months ago
- A novel machine learning pipeline to analyse spatial transcriptomics data☆260Updated this week
- Spatiotemporal modeling of spatial transcriptomics☆344Feb 25, 2026Updated 7 months ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆197Updated this week
- ANS_signature_scoring: A gene expression signature scoring Python package.☆20Jan 18, 2026Updated 8 months ago
- CellRank: dynamics from multi-view single-cell data☆457Updated this week
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Aligning gene expression trajectories of single-cell reference and query systems☆94Jul 28, 2026Updated 2 months ago
- ☆34Feb 25, 2025Updated last year
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆488Jun 6, 2025Updated last year
- Metacells - Single-cell RNA Sequencing Analysis☆131Updated this week
- ☆139Jun 10, 2022Updated 4 years ago
- ☆47Jul 24, 2025Updated last year
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆250May 11, 2026Updated 5 months ago
- Quantifying metabolism activity at the single-cell resolution☆199Aug 20, 2026Updated last month
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆476Apr 11, 2026Updated 5 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Python implementation of Gene Trajectory☆29Sep 4, 2024Updated 2 years ago
- A tool for semi-automatic cell type classification☆510May 22, 2026Updated 4 months ago
- LIANA: a LIgand-receptor ANalysis frAmework☆252Aug 7, 2024Updated 2 years ago
- Spatial Cellular Estimator for Tumors☆66Sep 27, 2026Updated last week
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆199Aug 24, 2026Updated last month
- LIANA+: an all-in-one framework for cell-cell communication☆319Sep 24, 2026Updated 2 weeks ago
- AUCell: score single cells with gene regulatory networks☆206Mar 9, 2024Updated 2 years ago