ZJUFanLab / scCubeLinks
an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT data
☆26Updated 10 months ago
Alternatives and similar repositories for scCube
Users that are interested in scCube are comparing it to the libraries listed below
Sorting:
- ☆60Updated last year
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆50Updated last year
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆72Updated 2 months ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆118Updated this week
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆77Updated last year
- End-to-end analysis of spatial multi-omics data☆102Updated last week
- ☆15Updated 7 months ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆49Updated 2 years ago
- ☆52Updated 3 months ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆79Updated 3 years ago
- Spatial-Linked Alignment Tool☆90Updated last year
- overview of spatial datasets☆78Updated last year
- SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.☆77Updated last year
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆41Updated last year
- ☆66Updated last year
- ☆43Updated last year
- ☆32Updated 2 years ago
- ☆146Updated last year
- Sub-cellular spatial transcriptomics Cell Segmentation☆68Updated 2 years ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics (STAGATE software based on pyG framewo…☆62Updated 2 years ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆100Updated 11 months ago
- Super-resolved spatial transcriptomics by deep data fusion☆73Updated 2 years ago
- Code used to benchmark Xenium☆73Updated last year
- ☆129Updated 3 years ago
- domain adaptation of spatial and single-cell transcriptome☆28Updated last year
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆75Updated last year
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆149Updated 2 months ago
- ☆28Updated 2 years ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆149Updated 2 weeks ago
- a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution☆50Updated 5 months ago