ZJUFanLab / scCubeLinks
an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT data
☆25Updated 4 months ago
Alternatives and similar repositories for scCube
Users that are interested in scCube are comparing it to the libraries listed below
Sorting:
- ☆59Updated 11 months ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆51Updated last week
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆67Updated last year
- End-to-end analysis of spatial multi-omics data☆81Updated last week
- ☆48Updated last month
- ☆13Updated 2 weeks ago
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆41Updated last year
- Code used to benchmark Xenium☆64Updated last year
- ☆56Updated 7 months ago
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆24Updated 8 months ago
- a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution☆34Updated 2 months ago
- ☆59Updated 10 months ago
- Spatial direct messaging detected by bivariate Moran☆27Updated this week
- Spatial-Linked Alignment Tool☆87Updated 6 months ago
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆94Updated 3 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆88Updated 4 months ago
- domain adaptation of spatial and single-cell transcriptome☆27Updated 9 months ago
- CAST package☆40Updated 8 months ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆36Updated last year
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆126Updated 2 weeks ago
- Interactive applications of stlearn☆15Updated 2 years ago
- an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…☆23Updated 2 years ago
- ☆60Updated 8 months ago
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆25Updated 10 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆34Updated 4 months ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆22Updated last year
- ☆124Updated last year
- ☆14Updated 3 years ago
- SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.☆64Updated last year
- Super-resolved spatial transcriptomics by deep data fusion☆74Updated 2 years ago