Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks
☆29Aug 16, 2021Updated 4 years ago
Alternatives and similar repositories for scMLnet
Users that are interested in scMLnet are comparing it to the libraries listed below
Sorting:
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆44Oct 10, 2025Updated 4 months ago
- BulkSignalR☆27Jul 24, 2025Updated 7 months ago
- ☆23Sep 29, 2025Updated 5 months ago
- Ordering gene-expression and functional events in single-cell experiments☆29Updated this week
- Hierarchical annotation of immune cells n scRNA-Seq data based on ssGSEA algorithm.☆10May 31, 2024Updated last year
- A package that performs cell type annotations on single cell resolution of spatial transcriptomics data, find the niche interactions and …☆14Dec 5, 2025Updated 2 months ago
- ☆23Jul 9, 2025Updated 7 months ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Feb 22, 2025Updated last year
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆143Nov 10, 2023Updated 2 years ago
- Cell clustering and communication network inference for single-cell transcriptomics☆14Sep 18, 2024Updated last year
- An R library for conducting analyses on COMPASS data.☆16Jun 10, 2021Updated 4 years ago
- R toolkit for inference and analysis of pathway-mediated cell-cell communication chain from single-cell transcriptomics☆38Mar 10, 2025Updated 11 months ago
- ☆36Nov 26, 2025Updated 3 months ago
- scAB detects multiresolution cell states with clinical significance☆20Nov 14, 2022Updated 3 years ago
- SpaceX: Gene Co-expression Network Estimation for Spatial Transcriptomics☆20Apr 5, 2023Updated 2 years ago
- A comprehensive tool to infer TF-centred, spatial gene regulatory networks for the spatially resolved transcriptomic data.☆19Apr 27, 2025Updated 10 months ago
- Gene set enrichment analysis for single-cell RNAseq data☆31Feb 17, 2023Updated 3 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Jun 19, 2025Updated 8 months ago
- ☆85Jun 29, 2024Updated last year
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆79Jul 25, 2025Updated 7 months ago
- Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data☆27Dec 10, 2025Updated 2 months ago
- Transcriptomics Visualization R package.☆76Apr 16, 2025Updated 10 months ago
- LIANA: a LIgand-receptor ANalysis frAmework☆232Aug 7, 2024Updated last year
- R package for Bioconductor submission☆38Dec 8, 2022Updated 3 years ago
- Single-Cell Inference of Class Switch Recombination☆20Feb 11, 2026Updated 2 weeks ago
- A single-cell transcriptomic analysis of endometriosis, endometriomas, eutopic endometrial samples and uninvolved ovary tissues highlight…☆18Jan 12, 2023Updated 3 years ago
- A software package for connecting cell level features in single cell RNA sequencing data with receptor ligand activity. Please be aware t…☆19Dec 5, 2024Updated last year
- ☆27Jun 4, 2023Updated 2 years ago
- Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information☆23Sep 30, 2022Updated 3 years ago
- scripts for analyzing data of macrophage development in human☆10Dec 8, 2019Updated 6 years ago
- ☆128Mar 27, 2022Updated 3 years ago
- ☆145Apr 19, 2025Updated 10 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆182Aug 12, 2025Updated 6 months ago
- Signature Analysis and Visualization for Single-Cell RNA-seq☆175Jun 10, 2024Updated last year
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆40Mar 6, 2024Updated last year
- MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…☆24Aug 15, 2023Updated 2 years ago
- scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells…☆17Feb 20, 2026Updated last week
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆12Jan 10, 2024Updated 2 years ago
- Detecting and dissecting anomalous anatomic regions in spatial transcriptomics with STANDS☆11Dec 27, 2024Updated last year