Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks
☆35Aug 16, 2021Updated 5 years ago
Alternatives and similar repositories for scMLnet
Users that are interested in scMLnet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆46Oct 10, 2025Updated last year
- BulkSignalR☆31Jun 23, 2026Updated 4 months ago
- Ordering gene-expression and functional events in single-cell experiments☆33Jul 6, 2026Updated 3 months ago
- ☆16Jul 21, 2025Updated last year
- An R library for conducting analyses on COMPASS data.☆20Jun 10, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Cell clustering and communication network inference for single-cell transcriptomics☆14Sep 18, 2024Updated 2 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆36Sep 14, 2026Updated last month
- R package for Bioconductor submission☆41Dec 8, 2022Updated 3 years ago
- R toolkit for inference and analysis of pathway-mediated cell-cell communication chain from single-cell transcriptomics☆38Mar 10, 2025Updated last year
- scripts for analyzing data of macrophage development in human☆10Dec 8, 2019Updated 6 years ago
- Hierarchical annotation of immune cells n scRNA-Seq data based on ssGSEA algorithm.☆12May 31, 2024Updated 2 years ago
- ☆27Jul 9, 2025Updated last year
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆87Jul 25, 2025Updated last year
- Gene set enrichment analysis for single-cell RNAseq data☆31Feb 17, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A package that performs cell type annotations on single cell resolution of spatial transcriptomics data, find the niche interactions and …☆19Sep 25, 2026Updated last month
- single cell Flux Estimation Analysis (scFEA)☆158Nov 10, 2023Updated 2 years ago
- popsicleR, a flexible R package aimed at providing most of the necessary quality controls and preliminary information for complete and de…☆25Dec 3, 2025Updated 10 months ago
- Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information☆24Sep 30, 2022Updated 4 years ago
- LIANA: a LIgand-receptor ANalysis frAmework☆253Aug 7, 2024Updated 2 years ago
- ☆91Jun 29, 2024Updated 2 years ago
- An eXplainable Cell-specific machine learning method to predict clinical Phenotypes using single-cell multi-omics☆17Sep 23, 2025Updated last year
- scGSVA: Perform GSVA for single cell RNA seq☆87Sep 5, 2026Updated last month
- A software package for connecting cell level features in single cell RNA sequencing data with receptor ligand activity (now archived). Pl…☆20May 13, 2026Updated 5 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Analysis and visualization of RNA-Seq results☆34Oct 17, 2026Updated last week
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆16Aug 17, 2023Updated 3 years ago
- Analysis of cell-cell communication at single-cell resolution☆108Sep 10, 2024Updated 2 years ago
- A computational method for inferring cell-cell communication signaling networks using single-cell transcriptomics data.☆21Dec 29, 2025Updated 10 months ago
- ☆15Oct 11, 2019Updated 7 years ago
- ☆10Sep 2, 2024Updated 2 years ago
- CCCvelo: Decoding dynamic cell-cell communication-driven cell state transitions in spatial transcriptomics☆13Sep 14, 2026Updated last month
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆27Feb 22, 2025Updated last year
- SpaceX: Gene Co-expression Network Estimation for Spatial Transcriptomics☆20Apr 5, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- My extensions for Seurat package☆10Jun 26, 2020Updated 6 years ago
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆13Jan 10, 2024Updated 2 years ago
- R implementation of GeneTrajectory☆72May 9, 2026Updated 5 months ago
- A portable and fast single cell type identifier☆63May 12, 2021Updated 5 years ago
- Transcriptomics Visualization R package.☆75May 21, 2026Updated 5 months ago
- TrendCatcher is an open source R-package that allows users to systematically analyze and visualize time course data. Please cite "Tempora…☆19May 20, 2025Updated last year
- A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data☆46Sep 29, 2026Updated last month