Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks
☆30Aug 16, 2021Updated 4 years ago
Alternatives and similar repositories for scMLnet
Users that are interested in scMLnet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆44Oct 10, 2025Updated 6 months ago
- ☆24Sep 29, 2025Updated 6 months ago
- Ordering gene-expression and functional events in single-cell experiments☆30Mar 7, 2026Updated last month
- BulkSignalR☆27Mar 30, 2026Updated last week
- Cell clustering and communication network inference for single-cell transcriptomics☆15Sep 18, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Hierarchical annotation of immune cells n scRNA-Seq data based on ssGSEA algorithm.☆12May 31, 2024Updated last year
- A package that performs cell type annotations on single cell resolution of spatial transcriptomics data, find the niche interactions and …☆14Dec 5, 2025Updated 4 months ago
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆148Nov 10, 2023Updated 2 years ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Feb 22, 2025Updated last year
- ☆23Jul 9, 2025Updated 9 months ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆35Jun 19, 2025Updated 9 months ago
- SpaceX: Gene Co-expression Network Estimation for Spatial Transcriptomics☆20Apr 5, 2023Updated 3 years ago
- R toolkit for inference and analysis of pathway-mediated cell-cell communication chain from single-cell transcriptomics☆38Mar 10, 2025Updated last year
- An R library for conducting analyses on COMPASS data.☆16Jun 10, 2021Updated 4 years ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- scripts for analyzing data of macrophage development in human☆10Dec 8, 2019Updated 6 years ago
- ☆38Nov 26, 2025Updated 4 months ago
- A single-cell transcriptomic analysis of endometriosis, endometriomas, eutopic endometrial samples and uninvolved ovary tissues highlight…☆18Jan 12, 2023Updated 3 years ago
- A software package for connecting cell level features in single cell RNA sequencing data with receptor ligand activity. Please be aware t…☆20Dec 5, 2024Updated last year
- LIANA: a LIgand-receptor ANalysis frAmework☆238Aug 7, 2024Updated last year
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆79Jul 25, 2025Updated 8 months ago
- R package for Bioconductor submission☆40Dec 8, 2022Updated 3 years ago
- ☆86Jun 29, 2024Updated last year
- Transcriptomics Visualization R package.☆76Apr 16, 2025Updated 11 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data. This is a novel R package of the RaceID3 and S…☆44Nov 25, 2024Updated last year
- Gene set enrichment analysis for single-cell RNAseq data☆31Feb 17, 2023Updated 3 years ago
- scAB detects multiresolution cell states with clinical significance☆22Nov 14, 2022Updated 3 years ago
- Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information☆23Sep 30, 2022Updated 3 years ago
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆29Sep 6, 2024Updated last year
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆40Mar 31, 2026Updated last week
- Analysis of cell-cell communication at single-cell resolution☆106Sep 10, 2024Updated last year
- Single-Cell Inference of Class Switch Recombination☆21Feb 11, 2026Updated 2 months ago
- Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data☆27Dec 10, 2025Updated 4 months ago
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- ☆27Jun 4, 2023Updated 2 years ago
- MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…☆24Aug 15, 2023Updated 2 years ago
- popsicleR, a flexible R package aimed at providing most of the necessary quality controls and preliminary information for complete and de…☆24Dec 3, 2025Updated 4 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆184Aug 12, 2025Updated 7 months ago
- Cell-cell communication and lineage inference for scRNA-seq data☆25May 3, 2023Updated 2 years ago
- Signature Analysis and Visualization for Single-Cell RNA-seq☆176Jun 10, 2024Updated last year
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆58Jan 29, 2026Updated 2 months ago