SunXQlab / scMLnet
Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks
☆26Updated 3 years ago
Alternatives and similar repositories for scMLnet:
Users that are interested in scMLnet are comparing it to the libraries listed below
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆22Updated this week
- Lung cancer 10X analysis☆11Updated 4 years ago
- code for data processing and visualisation associated with the stromal subclasses manuscript☆11Updated 4 years ago
- ☆16Updated 10 months ago
- Single-Cell Inference of Class Switch Recombination☆18Updated 5 months ago
- ☆54Updated last year
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆31Updated 4 years ago
- ☆17Updated 3 years ago
- Ordering gene-expression and functional events in single-cell experiments☆20Updated 10 months ago
- ☆22Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆52Updated 3 months ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆29Updated last month
- Unsupervised Inference of Developmental Directions for Single Cells☆21Updated last year
- analysis script for GBM single cell RNA seq data☆17Updated 3 years ago
- ☆12Updated 9 months ago
- MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…☆21Updated last year
- Spatial transcriptomics of heart tissue☆19Updated 2 years ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆21Updated 8 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆22Updated 2 years ago
- HCC single cell analysis for Alvarez, Benhammou et al.☆16Updated 2 years ago
- Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…☆19Updated 2 years ago
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆28Updated 2 years ago
- Integration of gut cell atlases☆15Updated last month
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 3 months ago
- ☆37Updated 2 years ago
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆13Updated last year
- ☆10Updated last year
- ☆15Updated last year
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆26Updated last month