Alternatives and similar repositories for STdeconvolve

Users that are interested in STdeconvolve are comparing it to the libraries listed below

• YosefLab / Compass
  In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes
  ☆117Updated 2 weeks ago
• saeyslab / multinichenetr
  MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…
  ☆168Updated 3 months ago
• theislab / scCODA
  A Bayesian model for compositional single-cell data analysis
  ☆180Updated 2 years ago
• changwn / scFEA
  single cell Flux Estimation Analysis (scFEA) Try the below web server!
  ☆135Updated 2 years ago
• igrabski / sc-SHC
  Significance analysis for clustering single-cell RNA-sequencing data
  ☆119Updated last year
• dpeerlab / SEACells
  SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data
  ☆169Updated 7 months ago
• JiekaiLab / scDIOR
  scDIOR: Single cell data IO softwaRe
  ☆150Updated 3 years ago
• theislab / scib-pipeline
  Snakemake pipeline that works with the scIB package to benchmark data integration methods.
  ☆79Updated 9 months ago
• saezlab / visium_heart
  Spatial transcriptomics of heart tissue
  ☆99Updated 2 years ago
• cellgeni / schard
  reticulate-free single cell format conversion
  ☆193Updated last month
• saezlab / liana
  LIANA: a LIgand-receptor ANalysis frAmework
  ☆224Updated last year
• yelabucsf / scrna-parameter-estimation
  Direct estimation of mean and covariance from single cell RNA seq experiments
  ☆121Updated 6 months ago
• quadbio / Pando
  Multiome GRN inference.
  ☆130Updated last year
• carmonalab / UCell
  Gene set scoring for single-cell data
  ☆170Updated 2 weeks ago
• Teichlab / cellhint
  A tool for semi-automatic cell type harmonization and integration
  ☆114Updated last week
• digitalcytometry / cytospace
  CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data
  ☆136Updated 8 months ago
• interactivereport / cellxgene_VIP
  Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…
  ☆159Updated last week
• swolock / scrublet
  Detect doublets in single-cell RNA-seq data
  ☆158Updated 4 years ago
• carmonalab / GeneNMF
  Methods to discover gene programs on single-cell data
  ☆159Updated last month
• BlishLab / scriabin
  Analysis of cell-cell communication at single-cell resolution
  ☆105Updated last year
• saezlab / dorothea
  R package to access DoRothEA's regulons
  ☆153Updated last year
• aertslab / AUCell
  AUCell: score single cells with gene regulatory networks
  ☆174Updated last year
• jfnavarro / st_pipeline
  ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …
  ☆88Updated 8 months ago
• YMa-lab / CARD
  ☆127Updated last year
• theislab / kBET
  An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.
  ☆168Updated last year
• theislab / zellkonverter
  Conversion between scRNA-seq objects
  ☆191Updated this week
• YosefLab / popV
  ☆83Updated this week
• quadbio / scMultiome_analysis_vignette
  Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis
  ☆68Updated last year
• navinlabcode / CellTrek
  ☆126Updated 3 years ago
• icbi-lab / infercnvpy
  Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.
  ☆177Updated last week