rbpatt2019 / chooseRLinks
An R framework for choosing clustering parameters in scRNA-seq analysis pipelines
☆34Updated 5 years ago
Alternatives and similar repositories for chooseR
Users that are interested in chooseR are comparing it to the libraries listed below
Sorting:
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated last year
- R package gathering a set of wrappers to apply various integration methods to Seurat objects (and rate such methods)☆27Updated last month
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 2 months ago
- Methods for decontamination of single cell data☆47Updated 5 months ago
- R package for semi-supervised single-cell data integration☆84Updated 2 months ago
- R package for pathway analysis in scRNA-seq data☆75Updated 11 months ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆32Updated last year
- scGSVA: Perform GSVA for single cell RNA seq☆63Updated 8 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆69Updated 9 months ago
- R Package for Single-Cell Dataset Processing and Visualization☆63Updated 3 years ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆85Updated last week
- Cell type pipes for R☆51Updated last year
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆30Updated 2 months ago
- A unified interface to spatial transcriptomics deconvolution tools☆42Updated last week
- ☆41Updated 4 years ago
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆115Updated 2 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆84Updated last month
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆41Updated last year
- ☆62Updated 5 years ago
- Gene set enrichment analysis for single-cell RNAseq data☆28Updated 2 years ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆33Updated last year
- Single cell RNA-seq analysis bundle☆35Updated 5 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆41Updated 2 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 7 months ago
- Pan-Cancer Single Cell Classifier☆73Updated last year
- An R package for handling and analysing imaging mass cytometry data☆27Updated last week
- R package for specialised analysis of single cell data☆38Updated 2 years ago
- SCDC☆45Updated 3 weeks ago