bicciatolab / popsicleRLinks
popsicleR, a flexible R package aimed at providing most of the necessary quality controls and preliminary information for complete and detailed analysis of single cell RNA-seq data.
☆24Updated last year
Alternatives and similar repositories for popsicleR
Users that are interested in popsicleR are comparing it to the libraries listed below
Sorting:
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆39Updated 3 years ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆35Updated 2 years ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆31Updated 2 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 3 months ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆42Updated last year
- ☆42Updated 4 years ago
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆31Updated 2 weeks ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆88Updated 2 months ago
- R package for specialised analysis of single cell data☆39Updated 2 years ago
- ☆50Updated 5 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 10 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated last year
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- R package for Bioconductor submission☆37Updated 2 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- R package containing the Cerebro application.☆40Updated 3 years ago
- A software package for connecting cell level features in single cell RNA sequencing data with receptor ligand activity. Please be aware t…☆17Updated 9 months ago
- A database of useful gene signatures for single-cell analysis☆27Updated 4 months ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆46Updated last year
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- R package for robust clustering of single cell RNA sequencing data☆35Updated last year
- Cell-cell communication and lineage inference for scRNA-seq data☆24Updated 2 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- Single-cell analysis with non-negative matrix factorization☆45Updated last month
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆23Updated 5 years ago
- An r package that works as a wrapper to homologene☆46Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆87Updated 3 months ago
- Single-cell Mutual Information-based Network Engineering Ranger☆20Updated 3 weeks ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 4 months ago