popsicleR, a flexible R package aimed at providing most of the necessary quality controls and preliminary information for complete and detailed analysis of single cell RNA-seq data.
☆25Dec 3, 2025Updated 10 months ago
Alternatives and similar repositories for popsicleR
Users that are interested in popsicleR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆15Apr 12, 2023Updated 3 years ago
- Code related to scRNA analysis using the scAmpi workflow☆26Jun 24, 2026Updated 3 months ago
- NaRnEA (Nonparametric analytical Rank-based Enrichment Analysis)☆12Mar 2, 2023Updated 3 years ago
- Single-cell Consensus Clusters of Encoded Subspaces☆15Jul 27, 2026Updated 2 months ago
- ☆13Nov 7, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Function Enrichment analysis and Network construction☆16Apr 25, 2026Updated 5 months ago
- Accurate, deep, fast, and fully-automated scRNA-seq cell-type annotation☆15Jan 21, 2025Updated last year
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆35Aug 16, 2021Updated 5 years ago
- Marker gene selection from scRNA-seq data☆16Sep 15, 2020Updated 6 years ago
- ☆10Nov 5, 2023Updated 2 years ago
- Benchmarking computational doublet-detection methods for single-cell RNA sequencing data☆10Feb 25, 2021Updated 5 years ago
- Calculating Tumor microenvironment score☆29Jan 20, 2023Updated 3 years ago
- ☆12Oct 31, 2020Updated 5 years ago
- A collection of tumour microenvironment single-cell RNA sequencing datasets for use in R and other pipelines.☆21Jul 28, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆27May 12, 2020Updated 6 years ago
- ☆17Apr 2, 2023Updated 3 years ago
- ☆30Jul 8, 2018Updated 8 years ago
- This is a repository of the scLinaX R package developed in the Tomofuji et al (Quantification of escape from X chromosome inactivation wi…☆12Sep 12, 2025Updated last year
- CellNeighborEX: Deciphering Neighbor-Dependent Gene Expression from Spatial Transcriptomics Data☆15Mar 13, 2026Updated 7 months ago
- A tool for removing doublets from single-cell RNA-seq data☆75Dec 2, 2020Updated 5 years ago
- BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses☆25Jul 11, 2021Updated 5 years ago
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆11Jan 21, 2024Updated 2 years ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆100Jan 30, 2026Updated 8 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- INSPIRE: interpretable, flexible and spatially-aware integration of multiple spatial transcriptomics datasets from diverse sources☆23May 28, 2026Updated 4 months ago
- Single Cell Oriented Reconstruction of PANDA-based Individually Optimized Networks☆28Updated this week
- Scalable, downsampling-free automated cell-population discovery, feature engineering, classification and visualization of single-cell (mo…☆12Aug 30, 2021Updated 5 years ago
- R package for analysing single cell data☆71Dec 8, 2022Updated 3 years ago
- ☆10Sep 2, 2024Updated 2 years ago
- ☆13Jan 8, 2026Updated 9 months ago
- cross-species analysis of cell identities, markers and regulations☆13Jul 11, 2025Updated last year
- ☆27Jun 5, 2025Updated last year
- COMUNET: a tool to explore and visualize intercellular communication☆13Apr 15, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Do microbiome analysis with dada2 and phyloseq object☆16Oct 9, 2024Updated 2 years ago
- Time-resolved single-cell transcriptomics (Zman-seq)☆12Apr 9, 2025Updated last year
- A ggplot extension for drawing smooth non-convex circles around a set of points.☆23May 20, 2024Updated 2 years ago
- Network analyses of single cell-based digital twins for personalized treatment of inflammatory disease☆17Mar 23, 2024Updated 2 years ago
- ☆41Aug 4, 2021Updated 5 years ago
- ☆17Apr 15, 2025Updated last year
- R markdown notebooks for the Tabula Muris network analysis in Iacono et al. (2019)☆12Jun 30, 2021Updated 5 years ago