popsicleR, a flexible R package aimed at providing most of the necessary quality controls and preliminary information for complete and detailed analysis of single cell RNA-seq data.
☆25Dec 3, 2025Updated 5 months ago
Alternatives and similar repositories for popsicleR
Users that are interested in popsicleR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code related to scRNA analysis using the scAmpi workflow☆28Jan 21, 2026Updated 4 months ago
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆15Apr 12, 2023Updated 3 years ago
- ☆12Nov 7, 2022Updated 3 years ago
- Single-cell Consensus Clusters of Encoded Subspaces☆15Aug 14, 2023Updated 2 years ago
- ☆15Apr 2, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- NaRnEA (Nonparametric analytical Rank-based Enrichment Analysis)☆11Mar 2, 2023Updated 3 years ago
- Calculating Tumor microenvironment score☆29Jan 20, 2023Updated 3 years ago
- ☆12Oct 31, 2020Updated 5 years ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆31Aug 16, 2021Updated 4 years ago
- ☆30Jul 8, 2018Updated 7 years ago
- ☆12Jan 8, 2026Updated 4 months ago
- ☆39Aug 4, 2021Updated 4 years ago
- Do microbiome analysis with dada2 and phyloseq object☆15Oct 9, 2024Updated last year
- Accurate, deep, fast, and fully-automated scRNA-seq cell-type annotation☆15Jan 21, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- CellNeighborEX: Deciphering Neighbor-Dependent Gene Expression from Spatial Transcriptomics Data☆16Mar 13, 2026Updated 2 months ago
- R markdown notebooks for the Tabula Muris network analysis in Iacono et al. (2019)☆12Jun 30, 2021Updated 4 years ago
- Gene Expression Decomposition and Integration☆21Feb 9, 2026Updated 3 months ago
- ☆21Nov 9, 2023Updated 2 years ago
- Code used for muti cellular factor analysis☆17Dec 13, 2023Updated 2 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Dec 2, 2020Updated 5 years ago
- Marker gene selection from scRNA-seq data☆16Sep 15, 2020Updated 5 years ago
- Function Enrichment analysis and Network construction☆15Apr 25, 2026Updated last month
- Flexible Integration of single-cell RNA-sequencing data for large-scale Multi-tissue cell atlas datasets☆13Sep 20, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- 📊 An R package for interactively exploring UCSC Xena https://xenabrowser.net/datapages/; Book: https://lishensuo.github.io/UCSCXenaShiny…☆104May 11, 2026Updated 2 weeks ago
- Shareable project for: Decomposing Oncogenic Transcriptional Signatures to Generate Maps of Divergent Cellular States☆10Nov 11, 2020Updated 5 years ago
- BulkSignalR☆27Mar 30, 2026Updated last month
- GREAT algorithm in Python☆15Oct 24, 2022Updated 3 years ago
- Vaeda method for computational doublet annotation☆19Feb 1, 2026Updated 3 months ago
- R package to access DoRothEA's regulons☆156Feb 24, 2024Updated 2 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆49Feb 9, 2024Updated 2 years ago
- represent each cell in UMAP plots as a pie chart☆16Sep 27, 2021Updated 4 years ago
- Quantifying metabolism activity at the single-cell resolution☆178Feb 18, 2026Updated 3 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Trajectory inference and differential expression over multiple conditions in scRNA-seq☆26Apr 22, 2021Updated 5 years ago
- ☆119Nov 12, 2022Updated 3 years ago
- ☆18Jun 13, 2024Updated last year
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆241May 8, 2023Updated 3 years ago
- pytorch dataloaders for single-cell perturbation data☆44Apr 24, 2026Updated last month
- Integrate Analysis and Visualization for Bioinformatic Enrichment Analyzer