bicciatolab / popsicleRLinks
popsicleR, a flexible R package aimed at providing most of the necessary quality controls and preliminary information for complete and detailed analysis of single cell RNA-seq data.
☆24Updated last year
Alternatives and similar repositories for popsicleR
Users that are interested in popsicleR are comparing it to the libraries listed below
Sorting:
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆39Updated 3 years ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆33Updated last year
- ☆41Updated 4 years ago
- R package containing the Cerebro application.☆40Updated 3 years ago
- R package for specialised analysis of single cell data☆38Updated 2 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 3 weeks ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 7 months ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆41Updated last year
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆29Updated 2 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated last year
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 8 months ago
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- A software package for connecting cell level features in single cell RNA sequencing data with receptor ligand activity. Please be aware t…☆17Updated 7 months ago
- Accurate, deep, fast, and fully-automated scRNA-seq cell-type annotation☆13Updated 5 months ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- R package for Bioconductor submission☆35Updated 2 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆23Updated 5 years ago
- R package for robust clustering of single cell RNA sequencing data☆35Updated last year
- scGSVA: Perform GSVA for single cell RNA seq☆62Updated 8 months ago
- An r package that works as a wrapper to homologene☆46Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆85Updated last week
- A database of useful gene signatures for single-cell analysis☆25Updated last month
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- ☆55Updated 4 years ago
- ☆50Updated 5 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 2 months ago
- 🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package☆33Updated last month
- ☆29Updated 7 years ago
- A R framework for pipeline benchmarking, with application to single-cell RNAseq☆41Updated 3 years ago