bicciatolab / popsicleR
popsicleR, a flexible R package aimed at providing most of the necessary quality controls and preliminary information for complete and detailed analysis of single cell RNA-seq data.
☆24Updated 4 months ago
Related projects: ⓘ
- corto (Correlation Tool): an R package to generate correlation-based DPI networks☆20Updated last year
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆26Updated 8 months ago
- ☆29Updated 6 years ago
- Clone of the Bioconductor repository for the batchelor package.☆16Updated 2 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆22Updated last year
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆31Updated 2 years ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆31Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆19Updated 5 months ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆32Updated last year
- SIB/Scilifelab autumn school in single cell omics 2019.☆21Updated 4 years ago
- Network construction Algorithm☆17Updated 2 weeks ago
- ☆36Updated 3 years ago
- Cluster Identity Predictor (R package implementation)☆18Updated 2 years ago
- Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1☆17Updated 4 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆25Updated last week
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆40Updated 7 months ago
- 'Best Practices for Spatial Transcriptomics Analysis with Bioconductor' online book☆34Updated this week
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 6 years ago
- Accurate, deep, fast, and fully-automated scRNA-seq cell-type annotation☆10Updated last year
- ConsensusTME Gene Sets and R Script☆38Updated 3 months ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆14Updated 2 years ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆22Updated last year
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- R package for specialised analysis of single cell data☆35Updated last year
- GLASS consortium☆13Updated 2 years ago
- ☆29Updated last year
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆19Updated last year
- The source code of web server TIP, including example data.☆16Updated 5 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆26Updated last year
- An r package that works as a wrapper to homologene☆40Updated 10 months ago