Gene set enrichment analysis for single-cell RNAseq data
☆31Feb 17, 2023Updated 3 years ago
Alternatives and similar repositories for singleseqgset
Users that are interested in singleseqgset are comparing it to the libraries listed below
Sorting:
- Inference of cell-cell communication from single-cell RNAseq data☆49Apr 21, 2025Updated 10 months ago
- R-code used for single-cell RNA-Seq analysis of kidney data.☆18Oct 17, 2019Updated 6 years ago
- ☆13Nov 2, 2017Updated 8 years ago
- An R package for drug response prediction and drug-gene association prediction.☆25May 9, 2025Updated 9 months ago
- ☆28Jan 25, 2022Updated 4 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Jan 24, 2023Updated 3 years ago
- Method for de novo mutation calling from droplet based single cell RNA seq data☆14Oct 6, 2021Updated 4 years ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆45Apr 12, 2023Updated 2 years ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆29Aug 16, 2021Updated 4 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Apr 13, 2021Updated 4 years ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆17Apr 4, 2022Updated 3 years ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆36Aug 7, 2023Updated 2 years ago
- R package for Protein activity analysis of single-cell RNAseq.☆86Dec 15, 2022Updated 3 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆117Apr 26, 2025Updated 10 months ago
- ☆41Apr 16, 2018Updated 7 years ago
- ☆19Feb 23, 2022Updated 4 years ago
- R package for specialised analysis of single cell data☆41Oct 14, 2022Updated 3 years ago
- Assessing the purity of single cell population☆142Jun 3, 2022Updated 3 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆96Nov 30, 2023Updated 2 years ago
- Code of the paper "DeepSpot: Leveraging Spatial Context for Enhanced Spatial Transcriptomics Prediction from H&E Images"☆12May 10, 2025Updated 9 months ago
- simpler single cell RNAseq data Visualization☆10Feb 28, 2025Updated last year
- Detecting and dissecting anomalous anatomic regions in spatial transcriptomics with STANDS☆11Dec 27, 2024Updated last year
- Code related to the Celligner manuscript☆46Oct 30, 2020Updated 5 years ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Sep 5, 2022Updated 3 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Apr 16, 2021Updated 4 years ago
- ☆114Sep 16, 2020Updated 5 years ago
- R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data☆11Apr 19, 2023Updated 2 years ago
- ☆36Nov 26, 2025Updated 3 months ago
- A fast and accurate deconvolution algorithm based on regularized matrix completion algorithm (ENIGMA)☆27Jun 21, 2023Updated 2 years ago
- A package to help convert different single-cell data formats to each other☆458Feb 20, 2026Updated last week
- ☆54Aug 1, 2024Updated last year
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆415Aug 22, 2025Updated 6 months ago
- Efficiently compute robust markers across single-cell datasets☆12Apr 21, 2021Updated 4 years ago
- FitDevo: accurate inference of single-cell developmental potential using sample-specific gene weight☆16Apr 7, 2024Updated last year
- Scanner of specific spatial patterns in tissues☆14Jul 15, 2022Updated 3 years ago
- Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using AnnData h5ad files.☆12Oct 1, 2024Updated last year
- Tumour Heterogeneity and Intercellular Networks of Nasopharyngeal Carcinoma at Single Cell Resolution☆13Mar 1, 2023Updated 3 years ago
- ☆18Feb 18, 2021Updated 5 years ago
- XEnograft Visualization & Analysis☆11Oct 18, 2025Updated 4 months ago