MarioniLab / miloDELinks
Framework for sensitive DE testing (using neighbourhoods)
☆70Updated 11 months ago
Alternatives and similar repositories for miloDE
Users that are interested in miloDE are comparing it to the libraries listed below
Sorting:
- Latent Embedding Multivariate Regression☆92Updated 7 months ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆115Updated 2 months ago
- R package for semi-supervised single-cell data integration☆83Updated last month
- Cell type pipes for R☆51Updated last year
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆92Updated 6 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆85Updated last week
- Single Cell Cluster Evaluation☆94Updated 3 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆84Updated last month
- Various utility functions for Seurat single-cell analysis☆51Updated 7 months ago
- R implementation of MULTI-seq sample classification workflow☆63Updated last year
- A Shiny web app for mapping datasets using Seurat v4☆132Updated 8 months ago
- ☆68Updated last year
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- R Package for Single-Cell Dataset Processing and Visualization☆63Updated 3 years ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆89Updated last year
- ☆41Updated 4 years ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆105Updated 2 years ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆107Updated 3 months ago
- ☆41Updated last month
- Analysis of cell-cell communication at single-cell resolution☆101Updated 10 months ago
- R package for Pathway RespOnsive GENe activity inference☆107Updated 2 years ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆62Updated 3 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆96Updated 4 years ago
- AnnData interoperability in R☆84Updated this week
- An R toolkit for estimation of cell composition from bulk expression data☆74Updated last month
- Capybara: A computational tool to measure cell identity and fate transitions☆59Updated 3 years ago
- Normalize CITEseq Data☆66Updated 3 months ago
- From geospatial to spatial -omics☆95Updated 4 months ago
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated 2 months ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year