MarioniLab / miloDELinks
Framework for sensitive DE testing (using neighbourhoods)
☆75Updated last month
Alternatives and similar repositories for miloDE
Users that are interested in miloDE are comparing it to the libraries listed below
Sorting:
- Latent Embedding Multivariate Regression☆97Updated last year
- R package for semi-supervised single-cell data integration☆92Updated last week
- marker-based purification of cell types from single-cell RNA-seq datasets☆134Updated 5 months ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆93Updated last year
- Cell type pipes for R☆52Updated last year
- Various utility functions for Seurat v5 single-cell analysis☆60Updated this week
- ☆74Updated 2 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆92Updated 7 months ago
- R package for Pathway RespOnsive GENe activity inference☆111Updated 2 years ago
- Single Cell Cluster Evaluation☆98Updated 4 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆90Updated 2 weeks ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆102Updated last week
- R implementation of MULTI-seq sample classification workflow☆65Updated 2 years ago
- AnnData interoperability in R☆135Updated 2 weeks ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆113Updated 2 months ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆119Updated 3 weeks ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated 2 years ago
- ☆45Updated last month
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆86Updated 3 weeks ago
- Pan-Cancer Single Cell Classifier☆81Updated last year
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 5 years ago
- ☆41Updated 4 years ago
- A Shiny web app for mapping datasets using Seurat v4☆141Updated last year
- Analysis of cell-cell communication at single-cell resolution☆105Updated last year
- From geospatial to spatial -omics☆100Updated 3 weeks ago
- Metacell - Single-cell mRNA Analysis☆117Updated 11 months ago
- R package for single cell and other data analysis using diffusion maps☆92Updated last month
- Normalize CITEseq Data☆66Updated last month
- A tool for unsupervised projection of single cell RNA-seq data☆96Updated 5 years ago
- R Package for Single-Cell Dataset Processing and Visualization☆65Updated 4 years ago