shangll123 / SpatialPCALinks
Spatially aware dimension reduction for spatial transcriptomics.
☆49Updated 2 months ago
Alternatives and similar repositories for SpatialPCA
Users that are interested in SpatialPCA are comparing it to the libraries listed below
Sorting:
- Multiview Intercellular SpaTial modeling framework☆56Updated last year
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- ☆21Updated 2 years ago
- Work with trained factor models in Python☆33Updated 7 months ago
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆34Updated last month
- CAST package☆40Updated 7 months ago
- Alignment of spatial genomics data using deep Gaussian processes☆26Updated 2 years ago
- MultiMAP for integration of single cell multi-omics☆56Updated last year
- Analyzing cellular niches in spatial transcriptomics data☆29Updated 6 months ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- Bayesian model for RNA velocity estimation of periodic manifolds☆33Updated 11 months ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆74Updated 3 years ago
- Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)☆29Updated 3 weeks ago
- Nonnegative spatial factorization for multivariate count data☆58Updated last year
- Single-cell multi-omics integration using Optimal Transport☆44Updated 9 months ago
- ☆27Updated 8 months ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆39Updated 8 months ago
- spatial transcriptome, single cell☆68Updated 2 years ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆42Updated 3 years ago
- Spatial analysis toolkit for single cell multiplexed tissue data☆30Updated 9 months ago
- ☆53Updated this week
- Test genes for Spatial Variation☆14Updated 5 months ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 3 months ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- Spatial direct messaging detected by bivariate Moran☆26Updated last month
- ☆26Updated last year
- ☆17Updated last year
- ☆45Updated 2 years ago
- Spatially resolved transcriptomic analysis☆55Updated 2 years ago
- A probabilistic factor model for spatial transcriptomics data with subcellular resolution☆23Updated 2 years ago