shangll123 / SpatialPCALinks
Spatially aware dimension reduction for spatial transcriptomics.
☆61Updated 9 months ago
Alternatives and similar repositories for SpatialPCA
Users that are interested in SpatialPCA are comparing it to the libraries listed below
Sorting:
- spatial transcriptome, single cell☆73Updated 2 years ago
- ☆22Updated 3 years ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆81Updated 3 years ago
- Multiview Intercellular SpaTial modeling framework☆71Updated 6 months ago
- An R package for performing cell typing in SMI and other single cell data☆44Updated 7 months ago
- MultiMAP for integration of single cell multi-omics☆55Updated 2 years ago
- Nonnegative spatial factorization for multivariate count data☆62Updated 2 years ago
- Spatial analysis toolkit for single cell multiplexed tissue data☆30Updated last year
- Work with trained factor models in Python☆36Updated last year
- A toolset for analysis and visualisation of Spatial Transcriptomics datasets.☆18Updated 4 years ago
- ☆30Updated last year
- CAST package☆41Updated last year
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Multi-modal single cell analysis pipelines☆61Updated last week
- Methods for visualization and analysis of spatially-resolved gene expression☆21Updated 4 months ago
- Multi-omics factor analysis v2☆54Updated last month
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆47Updated 4 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 6 months ago
- Test genes for Spatial Variation☆15Updated last year
- ☆19Updated last year
- ☆27Updated 6 years ago
- A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing☆34Updated 2 years ago
- Spatially resolved transcriptomic analysis☆62Updated 3 years ago
- ☆48Updated last week
- Identification of spatial homogeneous regions☆21Updated 2 months ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆64Updated last week
- An interface for Nested Stochastic Block Model for single cell analysis☆36Updated 2 months ago
- Information-based dimensionality reduction☆29Updated last year
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆38Updated 5 months ago