Spatially aware dimension reduction for spatial transcriptomics.
☆68Mar 18, 2025Updated last year
Alternatives and similar repositories for SpatialPCA
Users that are interested in SpatialPCA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CellNeighborEX: Deciphering Neighbor-Dependent Gene Expression from Spatial Transcriptomics Data☆16Mar 13, 2026Updated 4 months ago
- Bayesian Analytics for Spatial Segmentation☆33May 4, 2025Updated last year
- Spatially resolved transcriptomic analysis☆68Nov 17, 2022Updated 3 years ago
- TRUST4 manuscript evaluation☆17Jul 8, 2022Updated 4 years ago
- Test genes for Spatial Variation☆15Dec 20, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆18Nov 24, 2024Updated last year
- spatial transcriptome, single cell☆76Mar 18, 2023Updated 3 years ago
- Seqscope codes☆11Nov 28, 2021Updated 4 years ago
- Nonnegative spatial factorization for multivariate count data☆66Jun 28, 2023Updated 3 years ago
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆181Jan 8, 2026Updated 6 months ago
- ☆136Feb 11, 2024Updated 2 years ago
- NeuronMotif: deciphering cis-regulatory codes by layerwise demixing of deep neural networks☆11Dec 3, 2023Updated 2 years ago
- ☆74May 28, 2025Updated last year
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆46Feb 19, 2026Updated 5 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Extension of SpatialExperiment with sf☆57May 6, 2026Updated 2 months ago
- A computational tool for identification of 3D multi-modal spatial neighborhoods☆16Aug 1, 2025Updated 11 months ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆98Apr 30, 2026Updated 2 months ago
- ☆14Jan 16, 2019Updated 7 years ago
- Single-cell Graph Cuts Optimization☆16Apr 27, 2024Updated 2 years ago
- Vesalius: Dissecting Tissue Anatomy from Spatial Transcriptomic Data☆20Jan 26, 2026Updated 5 months ago
- Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.☆19Dec 5, 2024Updated last year
- Differential expression (DE); gene set Enrichment Analysis (GSEA); single cell RNAseq studies (scRNAseq)☆34Oct 6, 2022Updated 3 years ago
- Spatiotemporal single-cell RNA sequencing of developing hearts reveals interplay between cellular differentiation and morphogenesis☆13Oct 31, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Code for the spatialLIBD R/Bioconductor package and shiny app☆112May 20, 2026Updated 2 months ago
- This repository is an exploratory resource to accelerate opensource analysis of CosMx® Spatial Molecular Imager (SMI) data. Contained her…☆111Jun 27, 2026Updated 3 weeks ago
- ☆33May 4, 2025Updated last year
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆160Aug 3, 2025Updated 11 months ago
- ☆13Apr 27, 2022Updated 4 years ago
- End-to-end pipeline for segmenting cell nuclei on histology slides☆16Jul 19, 2022Updated 4 years ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆31Aug 8, 2023Updated 2 years ago
- ☆59Mar 18, 2026Updated 4 months ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆151Feb 20, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- MERFISH decoding software☆27Aug 16, 2025Updated 11 months ago
- Spatially-aware quality control for spatial transcriptomics☆16Oct 22, 2025Updated 8 months ago
- Isoform-level spatial transcriptomics analysis☆17May 3, 2026Updated 2 months ago
- A Toolbox for Spatial Transcriptomics Analysis☆171May 6, 2025Updated last year
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆122Jan 22, 2024Updated 2 years ago
- ☆44May 11, 2026Updated 2 months ago
- Rearrrange data by a set of methods☆23Mar 6, 2025Updated last year