shangll123 / SpatialPCALinks
Spatially aware dimension reduction for spatial transcriptomics.
☆56Updated 6 months ago
Alternatives and similar repositories for SpatialPCA
Users that are interested in SpatialPCA are comparing it to the libraries listed below
Sorting:
- ☆22Updated 3 years ago
- MultiMAP for integration of single cell multi-omics☆56Updated last year
- ☆29Updated last year
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆81Updated 3 years ago
- spatial transcriptome, single cell☆70Updated 2 years ago
- Multi-modal single cell analysis pipelines☆59Updated this week
- Methods for visualization and analysis of spatially-resolved gene expression☆21Updated last month
- ☆26Updated 5 years ago
- Multiview Intercellular SpaTial modeling framework☆68Updated 4 months ago
- CAST package☆40Updated 11 months ago
- An R package for performing cell typing in SMI and other single cell data☆41Updated 4 months ago
- Nonnegative spatial factorization for multivariate count data☆59Updated 2 years ago
- ☆18Updated last year
- Spatially resolved transcriptomic analysis☆60Updated 2 years ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- ☆29Updated 4 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 4 months ago
- Bayesian model for RNA velocity estimation of periodic manifolds☆33Updated last year
- Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper☆27Updated 2 years ago
- Work with trained factor models in Python☆35Updated 11 months ago
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- A probabilistic factor model for spatial transcriptomics data with subcellular resolution☆23Updated 2 years ago
- ☆53Updated 2 years ago
- Vesalius: Dissecting Tissue Anatomy from Spatial Transcriptomic Data☆20Updated 2 weeks ago
- Spatial analysis toolkit for single cell multiplexed tissue data☆30Updated last year
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated last year
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 7 months ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆26Updated 9 months ago
- A repository for benchmarking spatial deconvolution and mapping tools☆34Updated 4 months ago
- Alignment of spatial genomics data using deep Gaussian processes☆32Updated 2 years ago