Spatially aware dimension reduction for spatial transcriptomics.
☆65Mar 18, 2025Updated last year
Alternatives and similar repositories for SpatialPCA
Users that are interested in SpatialPCA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CellNeighborEX: Deciphering Neighbor-Dependent Gene Expression from Spatial Transcriptomics Data☆16Mar 13, 2026Updated 3 weeks ago
- Spatially resolved transcriptomic analysis☆65Nov 17, 2022Updated 3 years ago
- Test genes for Spatial Variation☆15Dec 20, 2024Updated last year
- Bayesian Analytics for Spatial Segmentation☆31May 4, 2025Updated 11 months ago
- ☆19Nov 24, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Extension of SpatialExperiment with sf☆57Updated this week
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆174Jan 8, 2026Updated 3 months ago
- Seqscope codes☆11Nov 28, 2021Updated 4 years ago
- ☆72May 28, 2025Updated 10 months ago
- spatial transcriptome, single cell☆74Mar 18, 2023Updated 3 years ago
- A computational tool for identification of 3D multi-modal spatial neighborhoods☆15Aug 1, 2025Updated 8 months ago
- ☆14Jan 16, 2019Updated 7 years ago
- Nonnegative spatial factorization for multivariate count data☆66Jun 28, 2023Updated 2 years ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆90Jun 7, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- TRUST4 manuscript evaluation☆17Jul 8, 2022Updated 3 years ago
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆153Aug 3, 2025Updated 8 months ago
- ☆131Feb 11, 2024Updated 2 years ago
- Code for the spatialLIBD R/Bioconductor package and shiny app☆112Mar 27, 2026Updated 2 weeks ago
- Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.☆18Dec 5, 2024Updated last year
- Differential expression (DE); gene set Enrichment Analysis (GSEA); single cell RNAseq studies (scRNAseq)☆34Oct 6, 2022Updated 3 years ago
- NeuronMotif: deciphering cis-regulatory codes by layerwise demixing of deep neural networks☆11Dec 3, 2023Updated 2 years ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆43Feb 19, 2026Updated last month
- Vesalius: Dissecting Tissue Anatomy from Spatial Transcriptomic Data☆20Jan 26, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- ☆59Mar 18, 2026Updated 3 weeks ago
- A Toolbox for Spatial Transcriptomics Analysis☆165May 6, 2025Updated 11 months ago
- Rearrrange data by a set of methods☆23Mar 6, 2025Updated last year
- An R package for feature selection in topological spaces.☆10Aug 12, 2021Updated 4 years ago
- ☆16Feb 20, 2025Updated last year
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆26Sep 20, 2022Updated 3 years ago
- Scripts for data and figure generation in SAVER paper☆18Jan 5, 2021Updated 5 years ago
- An R package for performing cell typing in SMI and other single cell data☆49May 19, 2025Updated 10 months ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆223Apr 1, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆15Jun 13, 2025Updated 9 months ago
- nnSVG: scalable method to identify spatially variable genes (SVGs) in spatially-resolved transcriptomics data☆24May 19, 2025Updated 10 months ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆139Feb 20, 2025Updated last year
- an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…☆28Mar 11, 2025Updated last year
- Simulation of rare and common variants based on 1000 genomes data☆19Sep 24, 2021Updated 4 years ago
- GitHub Actions for developing and maintaining Bioconductor packages☆13Nov 13, 2025Updated 4 months ago
- Single-cell Graph Cuts Optimization☆16Apr 27, 2024Updated last year