Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics
☆47Feb 19, 2026Updated 8 months ago
Alternatives and similar repositories for IRIS
Users that are interested in IRIS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Bayesian Analytics for Spatial Segmentation☆34May 4, 2025Updated last year
- ☆18Feb 20, 2025Updated last year
- Construct Tumor Transition Zone Microenvironment☆61Jun 25, 2025Updated last year
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆26Mar 16, 2025Updated last year
- ☆137Feb 11, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Cell clustering and communication network inference for single-cell transcriptomics☆14Sep 18, 2024Updated 2 years ago
- Spatial Single Cell transcriptomic library☆23Jan 15, 2026Updated 9 months ago
- ☆19Nov 24, 2024Updated last year
- SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.☆95Jun 24, 2024Updated 2 years ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆271Jul 8, 2026Updated 3 months ago
- SPatial INtegration of spatially resolved transcriptomics datasets☆19Mar 14, 2025Updated last year
- Code for the spatialLIBD R/Bioconductor package and shiny app☆116Oct 16, 2026Updated 2 weeks ago
- ☆152Jun 25, 2026Updated 4 months ago
- ☆66Aug 6, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Coarse-graining of large single-cell RNA-seq data into metacells☆110Apr 16, 2026Updated 6 months ago
- A Toolbox for Spatial Transcriptomics Analysis☆172May 6, 2025Updated last year
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆56Oct 31, 2024Updated 2 years ago
- CellNeighborEX: Deciphering Neighbor-Dependent Gene Expression from Spatial Transcriptomics Data☆15Mar 13, 2026Updated 7 months ago
- Python playground for cell-type-specific biology☆14Aug 25, 2026Updated 2 months ago
- Code for the paper `Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics"☆13Apr 23, 2024Updated 2 years ago
- ☆14Jun 1, 2026Updated 5 months ago
- BANKSY: spatial clustering☆171Updated this week
- A permutation-free framework for scalable, robust, and reference-based cell-cell communication analysis in single cell transcriptomics st…☆29May 23, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆191Jan 8, 2026Updated 9 months ago
- Tools for generating single-cell gene expression data☆34Jun 20, 2025Updated last year
- Code, data and analysis for moslin.☆15Oct 7, 2024Updated 2 years ago
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆76Dec 1, 2025Updated 11 months ago
- ☆26Aug 15, 2023Updated 3 years ago
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Sep 21, 2024Updated 2 years ago
- Alignment of spatial genomics data using deep Gaussian processes☆32Dec 14, 2022Updated 3 years ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆16Aug 17, 2023Updated 3 years ago
- ☆24Jan 10, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆39Jun 4, 2024Updated 2 years ago
- ☆13Oct 9, 2025Updated last year
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆68Apr 14, 2024Updated 2 years ago
- Toolkit for metacell analysis☆24Aug 8, 2024Updated 2 years ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆269Jan 16, 2026Updated 9 months ago
- capturing spatial colocalization and interaction in the TME using topological analysis in spatial transcriptomics data☆12May 14, 2025Updated last year
- Spatial cellular architecture predicts prognosis in glioblastoma - Nature Communications☆25Dec 11, 2023Updated 2 years ago