JEFworks-Lab / SErasterLinks
Spatial Experiments raster - a rasterization preprocessing framework for scalable spatial omics data analysis
☆18Updated 6 months ago
Alternatives and similar repositories for SEraster
Users that are interested in SEraster are comparing it to the libraries listed below
Sorting:
- Extension of SpatialExperiment with sf☆55Updated last month
- A software package for connecting cell level features in single cell RNA sequencing data with receptor ligand activity. Please be aware t…☆17Updated 10 months ago
- ☆94Updated last month
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Updated 2 years ago
- Profile purification of single-cell spatial transcriptomics data☆21Updated last week
- Single-cell analysis with non-negative matrix factorization☆45Updated 3 months ago
- ☆71Updated 5 months ago
- Cell type pipes for R☆52Updated last year
- Cell-type Relationship Analysis Workflow Done Across Distances☆38Updated 4 months ago
- ☆16Updated 11 months ago
- From geospatial to spatial -omics☆98Updated last month
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆22Updated 4 months ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 4 months ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆11Updated 2 years ago
- ☆27Updated 3 years ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- R package for specialised analysis of single cell data☆39Updated 3 years ago
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆31Updated last month
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆15Updated 2 years ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆81Updated 3 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆57Updated last week
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆39Updated 3 years ago
- R package for Bioconductor submission☆37Updated 2 years ago
- A repository of case studies using ProjecTILs☆15Updated last year
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated last year
- A database of useful gene signatures for single-cell analysis☆27Updated 5 months ago
- Python library for plotting Cellphonedb results. Ported from ktplots R package.☆56Updated last week
- R wrappers to connect Python dimensional reduction tools and single cell data objects (Seurat, SingleCellExperiment, etc...)☆36Updated 10 months ago
- R API and htmlwidget for Vitessce☆43Updated 2 months ago
- ☆30Updated 3 years ago