JEFworks-Lab / SEraster
Spatial Experiments raster - a rasterization preprocessing framework for scalable spatial omics data analysis
☆16Updated 3 weeks ago
Alternatives and similar repositories for SEraster:
Users that are interested in SEraster are comparing it to the libraries listed below
- ☆59Updated 8 months ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 2 years ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆8Updated last year
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- R package for specialised analysis of single cell data☆38Updated 2 years ago
- A software package for connecting cell level features in single cell RNA sequencing data with receptor ligand activity. Please be aware t…☆17Updated 3 months ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆16Updated 5 months ago
- Single-cell analysis with non-negative matrix factorization☆44Updated 4 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆29Updated 8 months ago
- A repository of case studies using ProjecTILs☆14Updated 7 months ago
- A unified interface to spatial transcriptomics deconvolution tools☆40Updated 2 weeks ago
- Cell type pipes for R☆51Updated last year
- Flexible, probablistic metrics for quality control of scRNA-seq data☆19Updated 2 years ago
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Updated 4 years ago
- An r package that works as a wrapper to homologene☆43Updated last year
- ☆75Updated this week
- Using self-organizing maps for visualization and interpretation of cytometry data☆26Updated this week
- ☆28Updated 2 years ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆31Updated 9 months ago
- General notes and resources on how to analyze Spatial Transcriptomics data☆12Updated last year
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆14Updated last year
- R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…☆12Updated 5 months ago
- ☆33Updated last year
- Toolkit for Single-Cell Velocity☆55Updated 2 months ago
- Robust Integration of Single-Cell Cytometry Datasets☆24Updated 2 weeks ago
- A database of useful gene signatures for single-cell analysis☆20Updated 11 months ago
- Spatiotemporal single-cell RNA sequencing of developing hearts reveals interplay between cellular differentiation and morphogenesis☆14Updated last year