Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics
☆49Apr 28, 2023Updated 2 years ago
Alternatives and similar repositories for STAGATE
Users that are interested in STAGATE are comparing it to the libraries listed below
Sorting:
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics (STAGATE software based on pyG framewo…☆62Nov 10, 2023Updated 2 years ago
- Deep fusion of spatial transcriptomics and histology images for interpretable high-definition embedding mapping☆17Mar 3, 2026Updated 2 weeks ago
- Identify spatial domain☆90May 29, 2025Updated 9 months ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆82Mar 5, 2022Updated 4 years ago
- ☆67Nov 6, 2024Updated last year
- PAST: a Prior-based self-Attention method for Spatial Transcriptomics☆12Mar 1, 2025Updated last year
- ☆41Dec 4, 2023Updated 2 years ago
- Cell clustering for spatial transcriptomics data with graph neural network☆64Mar 31, 2023Updated 2 years ago
- ☆31Aug 2, 2023Updated 2 years ago
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆50Apr 8, 2024Updated last year
- Code for the spatialLIBD R/Bioconductor package and shiny app☆111Jan 15, 2026Updated 2 months ago
- Spatial-Linked Alignment Tool☆90Dec 20, 2024Updated last year
- STAligner: Integrating spatial transcriptomics data across different conditions, technologies, and developmental stages☆25Dec 26, 2023Updated 2 years ago
- An offical repo for paper "Single-cells are Spatial Tokens: Transformers for Spatially Resolved Transcriptomics Data Imputation"☆18Aug 11, 2023Updated 2 years ago
- CellNeighborEX: Deciphering Neighbor-Dependent Gene Expression from Spatial Transcriptomics Data☆16Updated this week
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆138Feb 20, 2025Updated last year
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆34Apr 11, 2025Updated 11 months ago
- A novel machine learning pipeline to analyse spatial transcriptomics data☆242Mar 12, 2026Updated last week
- ☆13Nov 3, 2023Updated 2 years ago
- Cell-type Assignment and Module Extraction based on a heterogeneous graph neural network.☆10Oct 30, 2023Updated 2 years ago
- ☆27Jun 4, 2023Updated 2 years ago
- Multi-Layer Network Model leverages identification of spatial domains from spatial transcriptomics data☆12Aug 25, 2024Updated last year
- Web application demonstrating 3D modeling of spatial transcriptomics☆23Dec 9, 2024Updated last year
- ☆10Sep 7, 2023Updated 2 years ago
- ☆148Mar 19, 2024Updated 2 years ago
- scTM: A package for topic modelling in transcriptomics data☆24May 1, 2024Updated last year
- ☆13Feb 15, 2024Updated 2 years ago
- conST: an interpretable multi-modal contrastive learning framework for spatial transcriptomics☆29Feb 16, 2024Updated 2 years ago
- A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from …☆25Jan 31, 2026Updated last month
- Multi-slice Spatial Transcriptome Domain Analysis.☆13Dec 13, 2024Updated last year
- Graph Attention Auto-Encoders☆80Mar 24, 2023Updated 2 years ago
- ☆29Jan 4, 2024Updated 2 years ago
- scAce: an adaptive embedding and clustering method for scRNA-seq data☆12Sep 8, 2023Updated 2 years ago
- Spatially resolved transcriptomic analysis☆64Nov 17, 2022Updated 3 years ago
- ☆17Feb 18, 2025Updated last year
- ☆15Jun 17, 2021Updated 4 years ago
- CLEAR: Self-supervised contrastive learning for integrative single-cell RNA-seq data analysis☆35Nov 30, 2022Updated 3 years ago
- ☆10Nov 29, 2022Updated 3 years ago
- ☆35Dec 22, 2024Updated last year