Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics
☆55Apr 28, 2023Updated 3 years ago
Alternatives and similar repositories for STAGATE
Users that are interested in STAGATE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics (STAGATE software based on pyG framewo…☆70Nov 10, 2023Updated 2 years ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆89Mar 5, 2022Updated 4 years ago
- Identify spatial domain☆92May 29, 2025Updated last year
- ☆14Jun 10, 2025Updated last year
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆52Apr 8, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆73Nov 6, 2024Updated last year
- PAST: a Prior-based self-Attention method for Spatial Transcriptomics☆14Mar 1, 2025Updated last year
- Deep fusion of spatial transcriptomics and histology images for interpretable high-definition embedding mapping☆17May 26, 2026Updated 5 months ago
- ☆43Dec 4, 2023Updated 2 years ago
- SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph con…☆264Feb 9, 2026Updated 8 months ago
- Cell clustering for spatial transcriptomics data with graph neural network☆67Mar 31, 2023Updated 3 years ago
- Spatial-Linked Alignment Tool☆96Dec 20, 2024Updated last year
- ☆33Aug 2, 2023Updated 3 years ago
- Scalable graph-regularized dimension reduction for million-cell and multi-section spatial transcriptomics via GraphPCA-Turbo☆13Aug 13, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Code for the spatialLIBD R/Bioconductor package and shiny app☆116Oct 16, 2026Updated last week
- An offical repo for paper "Single-cells are Spatial Tokens: Transformers for Spatially Resolved Transcriptomics Data Imputation"☆18Aug 11, 2023Updated 3 years ago
- CellNeighborEX: Deciphering Neighbor-Dependent Gene Expression from Spatial Transcriptomics Data☆15Mar 13, 2026Updated 7 months ago
- An R package for fast topic inference to identify tissue architecture in multiplexed images☆18Jun 5, 2026Updated 4 months ago
- STAligner: Integrating spatial transcriptomics data across different conditions, technologies, and developmental stages☆26Dec 26, 2023Updated 2 years ago
- Single-Cell Multimodal Prediction via Transformer☆29Feb 7, 2024Updated 2 years ago
- ☆139Jun 10, 2022Updated 4 years ago
- A novel machine learning pipeline to analyse spatial transcriptomics data☆262Updated this week
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆153Feb 20, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆13Feb 15, 2024Updated 2 years ago
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆35Jun 21, 2026Updated 4 months ago
- ☆165Mar 19, 2024Updated 2 years ago
- ☆14Nov 3, 2023Updated 2 years ago
- ☆66Jul 23, 2024Updated 2 years ago
- ☆13Nov 19, 2023Updated 2 years ago
- Cell-type Assignment and Module Extraction based on a heterogeneous graph neural network.☆10Oct 30, 2023Updated 3 years ago
- Web application demonstrating 3D modeling of spatial transcriptomics☆25Dec 9, 2024Updated last year
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆164Sep 18, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- conST: an interpretable multi-modal contrastive learning framework for spatial transcriptomics☆30Feb 16, 2024Updated 2 years ago
- A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from …☆27Jan 31, 2026Updated 8 months ago
- scAce: an adaptive embedding and clustering method for scRNA-seq data☆12Sep 8, 2023Updated 3 years ago
- ☆29Jun 4, 2023Updated 3 years ago
- ☆15Jun 17, 2021Updated 5 years ago
- overview of spatial datasets☆79Updated this week
- ☆10Jun 1, 2026Updated 4 months ago