From geospatial to spatial -omics
☆103Jul 24, 2026Updated last month
Alternatives and similar repositories for voyager
Users that are interested in voyager are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Extension of SpatialExperiment with sf☆57May 6, 2026Updated 3 months ago
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆291Updated this week
- Probabilistic cell segmentation for in situ spatial transcriptomics☆187Updated this week
- CellNeighborEX: Deciphering Neighbor-Dependent Gene Expression from Spatial Transcriptomics Data☆16Mar 13, 2026Updated 5 months ago
- BANKSY: spatial clustering☆159May 30, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A package for analyzing spatial transcriptomics data with Gaussian smoothing, spatial gene correlation network clustering, gene module vi…☆23Apr 3, 2026Updated 5 months ago
- Compute the neighborhood consolidation matrix and identify SHRs☆15Jun 12, 2025Updated last year
- Identification of spatial homogeneous regions☆21Oct 6, 2025Updated 10 months ago
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆184Jan 8, 2026Updated 7 months ago
- ☆105May 4, 2026Updated 3 months ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆42Nov 18, 2025Updated 9 months ago
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆160Aug 3, 2025Updated last year
- High dimensional weighted gene co-expression network analysis☆492Jun 16, 2026Updated 2 months ago
- An R package for performing cell typing in SMI and other single cell data☆54May 1, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆482Jan 22, 2026Updated 7 months ago
- Code associated with the data analysis for Miyoshi & Morabito 2024☆31Jul 8, 2025Updated last year
- Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R☆19Aug 20, 2026Updated 2 weeks ago
- A Toolbox for Spatial Transcriptomics Analysis☆173May 6, 2025Updated last year
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆98Apr 30, 2026Updated 4 months ago
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"☆21Nov 27, 2025Updated 9 months ago
- ☆74May 28, 2025Updated last year
- Methods for detecting doublets in single-cell sequencing data☆263Updated this week
- This is a repository of IAMSAM, an image-based ST analysis tool☆22Jun 24, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A post-clustering differential expression (DE) method robust to false-positive inflation caused by double dipping☆30Aug 27, 2026Updated last week
- Test genes for Spatial Variation☆15Dec 20, 2024Updated last year
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆189Updated this week
- Single-cell analysis with non-negative matrix factorization☆49Jul 24, 2025Updated last year
- Framework for sensitive DE testing (using neighbourhoods)☆79Nov 11, 2025Updated 9 months ago
- Join subcellular Visium HD bins into cells☆143May 8, 2026Updated 3 months ago
- Fit Gamma-Poisson Generalized Linear Models Reliably☆127May 26, 2026Updated 3 months ago
- R API and htmlwidget for Vitessce☆46Aug 13, 2025Updated last year
- Spatial Transcriptomics Capture Location Deconvolution☆212Oct 20, 2025Updated 10 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A novel machine learning pipeline to analyse spatial transcriptomics data☆257Jul 12, 2026Updated last month
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆41Apr 30, 2026Updated 4 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆446Aug 25, 2026Updated last week
- R package for pathway analysis in scRNA-seq data☆82Aug 17, 2024Updated 2 years ago
- Spatial omics analysis toolbox☆389Updated this week
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆124Sep 29, 2025Updated 11 months ago
- Static plotting for spatialdata☆85Updated this week