pachterlab / voyager
From geospatial to spatial -omics
☆90Updated last month
Alternatives and similar repositories for voyager:
Users that are interested in voyager are comparing it to the libraries listed below
- ☆80Updated 3 weeks ago
- R package for semi-supervised single-cell data integration☆81Updated 3 weeks ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆90Updated 3 months ago
- Pan-Cancer Single Cell Classifier☆66Updated 10 months ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆72Updated 2 years ago
- Latent Embedding Multivariate Regression☆87Updated 4 months ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆81Updated 7 months ago
- Framework for sensitive DE testing (using neighbourhoods)☆64Updated 8 months ago
- Normalize CITEseq Data☆65Updated last week
- Coarse-graining of large single-cell RNA-seq data into metacells☆77Updated 7 months ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆106Updated 2 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆73Updated 11 months ago
- This repository is an exploratory resource to accelerate opensource analysis of CosMx® Spatial Molecular Imager (SMI) data. Contained her…☆62Updated 2 weeks ago
- Single Cell Cluster Evaluation☆94Updated 3 years ago
- R package for pathway analysis in scRNA-seq data☆72Updated 7 months ago
- R package for single cell and other data analysis using diffusion maps☆85Updated 4 months ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆103Updated 2 years ago
- Cell type pipes for R☆51Updated last year
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆31Updated 10 months ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆93Updated last year
- Multiome GRN inference.☆120Updated 11 months ago
- R package to visualize gene expression data based on weighted kernel density estimation☆101Updated last year
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated last year
- ☆54Updated 4 years ago
- Mixed-effect model to test differences in cell type proportions from single-cell data, in R☆100Updated last week
- AnnData interoperability in R☆73Updated this week
- Clone of the Bioconductor repository for the scran package.☆41Updated 7 months ago
- A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …☆45Updated 2 weeks ago
- An R-based interface for loom files☆66Updated 4 years ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆69Updated 2 months ago