pachterlab / voyagerLinks
From geospatial to spatial -omics
☆100Updated last week
Alternatives and similar repositories for voyager
Users that are interested in voyager are comparing it to the libraries listed below
Sorting:
- ☆99Updated 4 months ago
- AnnData interoperability in R☆149Updated this week
- Latent Embedding Multivariate Regression☆99Updated last year
- This repository is an exploratory resource to accelerate opensource analysis of CosMx® Spatial Molecular Imager (SMI) data. Contained her…☆94Updated this week
- Framework for sensitive DE testing (using neighbourhoods)☆76Updated 3 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆98Updated 8 months ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆93Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆92Updated this week
- marker-based purification of cell types from single-cell RNA-seq datasets☆138Updated 6 months ago
- R package for semi-supervised single-cell data integration☆95Updated 2 weeks ago
- R package for single cell and other data analysis using diffusion maps☆95Updated 3 months ago
- Cell type pipes for R☆52Updated 2 years ago
- Pan-Cancer Single Cell Classifier☆83Updated last year
- R package for pathway analysis in scRNA-seq data☆77Updated last year
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆35Updated last month
- Tools for NanoString GeoMx Digital Spatial Profiler data for reading DCC and PKC files to NanoStringGeomxSet class, Normalization and QC.…☆47Updated 4 months ago
- Normalize CITEseq Data☆67Updated 3 months ago
- Capybara: A computational tool to measure cell identity and fate transitions☆60Updated 3 years ago
- Unified access to several second-generation deconvolution methods☆91Updated last month
- scGSVA: Perform GSVA for single cell RNA seq☆70Updated last week
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆84Updated 3 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆45Updated 2 weeks ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆40Updated 2 months ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆87Updated 2 months ago
- ☆48Updated 2 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆85Updated 10 months ago
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆45Updated 2 weeks ago
- Collection of cell type reference datasets.☆64Updated last year
- Efficient and precise single-cell reference atlas mapping with Symphony☆113Updated 3 months ago
- ☆41Updated 4 years ago