From geospatial to spatial -omics
☆101Mar 18, 2026Updated last week
Alternatives and similar repositories for voyager
Users that are interested in voyager are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Extension of SpatialExperiment with sf☆57Mar 7, 2026Updated 2 weeks ago
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆267Updated this week
- BANKSY: spatial clustering☆138Oct 15, 2025Updated 5 months ago
- Compute the neighborhood consolidation matrix and identify SHRs☆14Jun 12, 2025Updated 9 months ago
- Identification of spatial homogeneous regions☆21Oct 6, 2025Updated 5 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- CellNeighborEX: Deciphering Neighbor-Dependent Gene Expression from Spatial Transcriptomics Data☆16Mar 13, 2026Updated last week
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆171Jan 8, 2026Updated 2 months ago
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆154Aug 3, 2025Updated 7 months ago
- Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R☆17Dec 18, 2024Updated last year
- High dimensional weighted gene co-expression network analysis☆468Mar 13, 2026Updated last week
- Cell-type Relationship Analysis Workflow Done Across Distances☆41Nov 18, 2025Updated 4 months ago
- Probabilistic cell segmentation for in situ spatial transcriptomics☆160Mar 13, 2026Updated last week
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆444Jan 22, 2026Updated 2 months ago
- ☆99Updated this week
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A Toolbox for Spatial Transcriptomics Analysis☆166May 6, 2025Updated 10 months ago
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"☆21Nov 27, 2025Updated 3 months ago
- ☆72May 28, 2025Updated 9 months ago
- This is a repository of IAMSAM, an image-based ST analysis tool☆22Jun 24, 2025Updated 9 months ago
- Methods for detecting doublets in single-cell sequencing data☆233Feb 12, 2026Updated last month
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆90Jun 7, 2022Updated 3 years ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆161Mar 16, 2026Updated last week
- Test genes for Spatial Variation☆15Dec 20, 2024Updated last year
- A post-clustering differential expression (DE) method robust to false-positive inflation caused by double dipping☆28Dec 11, 2025Updated 3 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Single-cell analysis with non-negative matrix factorization☆48Jul 24, 2025Updated 8 months ago
- Join subcellular Visium HD bins into cells☆138Nov 4, 2025Updated 4 months ago
- Framework for sensitive DE testing (using neighbourhoods)☆76Nov 11, 2025Updated 4 months ago
- R API and htmlwidget for Vitessce☆44Aug 13, 2025Updated 7 months ago
- A novel machine learning pipeline to analyse spatial transcriptomics data☆242Mar 12, 2026Updated 2 weeks ago
- An open and interoperable data framework for spatial omics data☆356Updated this week
- Fit Gamma-Poisson Generalized Linear Models Reliably☆120Mar 17, 2025Updated last year
- Spatial Transcriptomics Capture Location Deconvolution☆203Oct 20, 2025Updated 5 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆423Sep 4, 2025Updated 6 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Code associated with the data analysis for Miyoshi & Morabito 2024☆27Jul 8, 2025Updated 8 months ago
- R package for pathway analysis in scRNA-seq data☆78Aug 17, 2024Updated last year
- Spatial omics analysis toolbox☆365Feb 12, 2026Updated last month
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆116Sep 29, 2025Updated 5 months ago
- R package to infer biological activities from omics data using a collection of methods.☆286Dec 16, 2025Updated 3 months ago
- scVI extension for unspliced RNA☆16May 18, 2025Updated 10 months ago
- ☆19Nov 25, 2024Updated last year