genomicepidemiology / plasmidfinderLinks
☆19Updated 2 years ago
Alternatives and similar repositories for plasmidfinder
Users that are interested in plasmidfinder are comparing it to the libraries listed below
Sorting:
- Pipeline for the identification of (coding) gene structures in draft genomes.☆30Updated last year
- ☆40Updated last month
- De novo construction of isoforms from long-read data☆34Updated 4 months ago
- ☆39Updated last month
- De novo clustering of long transcript reads into genes☆68Updated 6 months ago
- Small variant calling for haploid samples☆45Updated 2 months ago
- ☆66Updated 2 years ago
- ☆73Updated last month
- PECAT, a phased error correct and assembly tool☆54Updated 3 months ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆35Updated 5 months ago
- VCF Observer is a VCF file analysis, comparison, and visualization tool.☆18Updated 10 months ago
- A tool for simulating random mutations in any genome☆42Updated last year
- A Nextflow pipeline for evaluating assembly quality☆38Updated 3 weeks ago
- ☆21Updated 3 months ago
- A method for measuring allele-specific telomere length and characterizing telomere variant repeat sequences from long reads.☆22Updated this week
- a simple tool for listing conda environments with descriptions☆14Updated 7 months ago
- fastest GTF/GFF-to-BED converter chilling around☆28Updated 3 weeks ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆25Updated 5 months ago
- GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology☆25Updated 6 months ago
- ☆15Updated 2 weeks ago
- ☆27Updated 8 months ago
- The Isoforms from Single-Cell; Long-read Expression Suite☆35Updated 9 months ago
- AMBER: Assessment of Metagenome BinnERs☆30Updated 9 months ago
- Official repo for the standalone package of Coding Potential Calculator (CPC) 2.☆25Updated 4 years ago
- MycoSNP: Whole Genome Sequencing Analysis of Fungal Isolates☆78Updated last month
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆60Updated 2 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆54Updated 2 months ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆77Updated 4 months ago
- showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.☆32Updated 6 years ago