genomicepidemiology / plasmidfinder
☆9Updated last year
Alternatives and similar repositories for plasmidfinder:
Users that are interested in plasmidfinder are comparing it to the libraries listed below
- Pipeline for the identification of (coding) gene structures in draft genomes.☆27Updated 11 months ago
- ☆32Updated 3 weeks ago
- genomic variant frequency estimation☆11Updated 3 months ago
- ☆44Updated 2 weeks ago
- De novo construction of isoforms from long-read data☆26Updated 5 months ago
- De novo clustering of long transcript reads into genes☆59Updated last week
- PECAT, a phased error correct and assembly tool☆49Updated last week
- ☆18Updated 5 months ago
- Small variant calling for haploid samples☆35Updated last week
- ☆61Updated last year
- ☆29Updated 3 weeks ago
- a simple tool for listing conda environments with descriptions☆12Updated last month
- Evaluating genome assemblies☆88Updated last month
- map Illumina metagenomes to genomes!☆38Updated last month
- VCF Observer is a VCF file analysis, comparison, and visualization tool.☆17Updated 4 months ago
- Toolkit for manipulating FASTA and SAM files☆18Updated last year
- Build a map of genes present across a set of microbial genomes☆14Updated last week
- MycoSNP: Whole Genome Sequencing Analysis of Fungal Isolates☆55Updated 2 weeks ago
- ☆14Updated last month
- Nextflow DSL2 pipeline to generate a Genome Note, including assembly statistics, quality metrics, and Hi-C contact maps. This workflow is…☆26Updated this week
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆24Updated 7 months ago
- Reference-guided multiple sequence alignment of viral genomes☆68Updated 3 months ago
- ☆21Updated 4 months ago
- Plasmid analysis using rearrangement distances☆42Updated 5 months ago
- kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more☆31Updated 4 months ago
- GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology☆21Updated 3 weeks ago
- fastest GTF/GFF-to-BED converter chilling around☆25Updated 3 months ago
- programs and scripts, mainly python, for analyses related to nucleic or protein sequences☆24Updated last month
- ☆24Updated 2 months ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆63Updated last month