ding-lab / morphView external linksLinks
☆14Oct 24, 2025Updated 3 months ago
Alternatives and similar repositories for morph
Users that are interested in morph are comparing it to the libraries listed below
Sorting:
- Code for spatial subclone paper☆16Jan 23, 2025Updated last year
- ☆12Sep 29, 2023Updated 2 years ago
- A computational tool for identification of 3D multi-modal spatial neighborhoods☆15Aug 1, 2025Updated 6 months ago
- CosMx Spatial Molecular Imager-derived cell profiles to aid in cell typing of SMI data.☆33Jan 24, 2025Updated last year
- ☆26Nov 2, 2023Updated 2 years ago
- single cell analysis of treatment naive and treated human PDAC☆25May 27, 2022Updated 3 years ago
- The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequ…☆61Sep 19, 2025Updated 4 months ago
- ☆13Apr 27, 2022Updated 3 years ago
- Single cell Nanopore sequencing data for Genotype and Phenotype☆57May 15, 2025Updated 8 months ago
- Scanner of specific spatial patterns in tissues☆14Jul 15, 2022Updated 3 years ago
- ☆13Sep 30, 2024Updated last year
- The Isoforms from Single-Cell; Long-read Expression Suite☆37Jan 14, 2025Updated last year
- Pipeline for the identification of (coding) gene structures in draft genomes.☆36May 9, 2024Updated last year
- ☆12Oct 23, 2023Updated 2 years ago
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆17Apr 20, 2024Updated last year
- ☆43Jan 23, 2026Updated 3 weeks ago
- Spot pseudo-Imager on top of histology☆44Dec 12, 2025Updated 2 months ago
- SpaceX: Gene Co-expression Network Estimation for Spatial Transcriptomics☆20Apr 5, 2023Updated 2 years ago
- Cross-modal Identification of Tertiary Lymphoid Structures☆23Jun 19, 2024Updated last year
- Small variant calling for haploid samples☆48Jan 5, 2026Updated last month
- AUCell: score single cells with gene regulatory networks☆183Mar 9, 2024Updated last year
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆49Nov 20, 2025Updated 2 months ago
- Automatic selection of number of principal components☆17Jun 27, 2022Updated 3 years ago
- T1K is a versatile methods to genotype highly polymorphic genes (e.g. KIR, HLA) with bulk or single-cell RNA-seq, WGS or WES data.☆98Dec 21, 2025Updated last month
- A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.☆49Updated this week
- ☆26Apr 1, 2025Updated 10 months ago
- De novo reconstruction of cell interaction landscapes from single-cell spatial transcriptome data☆21Oct 11, 2022Updated 3 years ago
- Analysis pipeline for CUT&TAG data☆22Sep 2, 2020Updated 5 years ago
- CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements☆22Oct 8, 2025Updated 4 months ago
- ☆22Jul 30, 2025Updated 6 months ago
- ☆27Jun 4, 2023Updated 2 years ago
- A Tidy Framework to Hack Gene Expression Signatures☆20Apr 20, 2025Updated 9 months ago
- Hierarchical Cell Annotation☆26Nov 17, 2024Updated last year
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆102Jul 23, 2024Updated last year
- ☆57Feb 23, 2024Updated last year
- Tumor Immune Single-cell Hub☆22Aug 13, 2020Updated 5 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Mar 25, 2024Updated last year
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆167Jan 8, 2026Updated last month
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆64Jan 20, 2026Updated 3 weeks ago