human-pangenomics / HPP_Year1_Data_Freeze_v1.0
☆48Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for HPP_Year1_Data_Freeze_v1.0
- Assemblies from HPP Year 1 production☆66Updated last year
- ☆57Updated 3 weeks ago
- ☆47Updated 4 years ago
- Fast and accurate coordinate conversion between assemblies☆108Updated last month
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆96Updated 3 years ago
- Simple pileup-based variant caller☆81Updated 7 months ago
- Tandem repeat expansion detection or genotyping from long-read alignments☆67Updated last month
- Toolkit for calling structural variants using short or long reads☆95Updated 2 weeks ago
- Wally: Visualization of aligned sequencing reads and contigs☆108Updated last month
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆47Updated 3 years ago
- Human Pangenome Reference Consortium - HG002 Data Freeze (v1.0)☆75Updated 2 years ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆105Updated last month
- Structural variant caller for real-time long-read sequencing data☆55Updated last year
- Data from the Human PanGenomics Project☆60Updated 3 years ago
- Show pangenome graphs in an easy way☆53Updated 2 years ago
- Predict 5mC in PacBio HiFi reads☆32Updated last week
- ☆42Updated 7 years ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆38Updated last year
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆85Updated 2 weeks ago
- ☆77Updated 4 years ago
- vcfdist: Accurately benchmarking phased variant calls☆76Updated last week
- Structural Variant Index☆69Updated last week
- Pangenome-based genome inference☆111Updated this week
- TGS scaffolding☆45Updated 2 years ago
- ☆79Updated 6 months ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- Phased assembly variant caller☆97Updated 2 weeks ago
- ☆69Updated last month