Alternatives and similar repositories for telogator2

Users that are interested in telogator2 are comparing it to the libraries listed below

• zstephens / telogator
  A method for measuring chromosome-specific telomere length from long reads
  ☆22Updated last year
• aljpetri / isONform
  De novo construction of isoforms from long-read data
  ☆32Updated 3 months ago
• novoalab / modPhred
  modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data
  ☆16Updated last year
• IGDRion / ANNEXA
  Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs).
  ☆15Updated this week
• bcgsc / ntLink
  Minimizer-based assembly scaffolding and mapping using long reads
  ☆42Updated 11 months ago
• WGLab / DeepRepeat
  An accurate repeat detection from Nanopore data using deep learning and image techniques
  ☆23Updated 2 years ago
• DecodeGenetics / svimmer
  Structural variant merging tool
  ☆54Updated last year
• hitbc / gcSV
  ☆21Updated 6 months ago
• tobiasrausch / vc
  A tutorial on structural variant calling for short read sequencing data
  ☆39Updated 10 months ago
• HKU-BAL / Clair3-RNA
  Clair3-RNA - a long-read small variant caller for RNA sequencing data
  ☆29Updated 5 months ago
• epi2me-labs / wf-pore-c
  ☆45Updated 7 months ago
• OliveiraDS-hub / ChimeraTE
  A pipeline to detect chimeric transcripts derived from genes and transposable elements.
  ☆30Updated last month
• jonassibbesen / rpvg
  Method for inferring path posterior probabilities and abundances from pangenome graph read alignments
  ☆57Updated 2 weeks ago
• LuoGroup2023 / DeChat
  Repeat and haplotype aware error correction in nanopore sequencing reads with DeChat
  ☆23Updated 4 months ago
• human-pangenomics / hprc-tutorials
  ☆18Updated last year
• dubssieg / pancat
  Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions
  ☆35Updated 4 months ago
• lh3 / minisplice
  Scoring GT/AG sites for improving spliced alignment
  ☆45Updated 2 months ago
• farhangus / Sniffles2_plot
  ☆31Updated last year
• SJTU-CGM / HUPAN
  Human pan-genome analysis pipeline
  ☆30Updated 5 years ago
• UCSC-nanopore-cgl / margin
  ☆33Updated 2 years ago
• multiz / multiz
  DNA multiple sequence aligner, official version from Penn State's Miller Lab
  ☆36Updated 6 years ago
• WGLab / LongReadSum
  ☆24Updated last week
• LHG-GG / I002C
  Telomere-to-Telomere diploid Indian Genome
  ☆14Updated 2 months ago
• TimoLassmann / samstat
  SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.
  ☆24Updated 2 years ago
• huangnengCSU / NanoSNP
  A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.
  ☆21Updated 2 years ago
• mkpython3 / Mutation-Simulator
  A tool for simulating random mutations in any genome
  ☆42Updated last year
• mgaleyuw / MeOW
  Automated Detection and Qualification of Differential Methylation
  ☆14Updated last year
• 1kg-ont-vienna / sv-analysis
  SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel
  ☆32Updated 4 months ago
• Dfam-consortium / FamDB
  FamDB file format library and utilities
  ☆31Updated 3 weeks ago
• treangenlab / methphaser
  MethPhaser: methylation-based haplotype phasing of human genomes
  ☆49Updated 6 months ago