zstephens / telogator2Links
A method for measuring allele-specific telomere length and characterizing telomere variant repeat sequences from long reads.
☆22Updated 2 months ago
Alternatives and similar repositories for telogator2
Users that are interested in telogator2 are comparing it to the libraries listed below
Sorting:
- De novo construction of isoforms from long-read data☆34Updated 4 months ago
- ☆46Updated this week
- Structural variant merging tool☆55Updated last year
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆58Updated last month
- Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs).☆15Updated last week
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆36Updated 6 years ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated last year
- A tutorial on structural variant calling for short read sequencing data☆38Updated last year
- ☆34Updated 2 years ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆30Updated 3 months ago
- ☆18Updated last year
- A method for measuring chromosome-specific telomere length from long reads☆22Updated last year
- Scoring GT/AG sites for improving spliced alignment☆46Updated last month
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆38Updated last year
- Repeat and haplotype aware error correction in nanopore sequencing reads with DeChat☆23Updated 5 months ago
- Structural variant (SV) analysis tools☆38Updated last year
- ☆24Updated last month
- MarginPolish: Graph based assembly polishing☆47Updated 4 years ago
- An insertion caller for Illumina paired-end WGS data.☆23Updated 2 months ago
- Tumor-normal variant calling workflow using HiFi reads☆22Updated 3 weeks ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆37Updated 6 months ago
- perSVade: personalized Structural Variation detection☆40Updated last month
- ☆36Updated last year
- De novo tandem repeat calling from PacBio HiFi data☆18Updated 4 months ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆50Updated 7 months ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆52Updated 7 months ago
- WDL workflows for variant calling and assembly using ONT☆37Updated 3 weeks ago
- FamDB file format library and utilities☆31Updated 2 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated 2 weeks ago
- ☆32Updated last year