zstephens / telogator2Links
A method for measuring allele-specific telomere length and characterizing telomere variant repeat sequences from long reads.
☆22Updated last month
Alternatives and similar repositories for telogator2
Users that are interested in telogator2 are comparing it to the libraries listed below
Sorting:
- De novo construction of isoforms from long-read data☆35Updated 6 months ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated last year
- ☆47Updated last month
- A tutorial on structural variant calling for short read sequencing data☆38Updated last year
- Telomere-to-Telomere diploid Indian Genome☆14Updated 5 months ago
- Structural variant merging tool☆57Updated last year
- Repeat and haplotype aware error correction in nanopore sequencing reads with DeChat☆25Updated 7 months ago
- Clair3-RNA - a long-read small variant caller for RNA sequencing data☆36Updated last week
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆59Updated 3 months ago
- ☆33Updated 3 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆39Updated last month
- MethPhaser: methylation-based haplotype phasing of human genomes☆52Updated 10 months ago
- FamDB file format library and utilities☆33Updated 4 months ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆34Updated 5 months ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆53Updated 9 months ago
- A method for measuring chromosome-specific telomere length from long reads☆22Updated last year
- Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs).☆16Updated 2 weeks ago
- ☆19Updated last year
- De novo tandem repeat calling from PacBio HiFi data☆19Updated 3 weeks ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆38Updated 8 months ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆24Updated 2 years ago
- Tumor-normal variant calling workflow using HiFi reads☆25Updated 3 weeks ago
- WDL workflows for variant calling and assembly using ONT☆38Updated 2 months ago
- ☆21Updated 10 months ago
- ☆28Updated 3 months ago
- Human pan-genome analysis pipeline☆31Updated 5 years ago
- ☆38Updated last year
- ☆32Updated last year
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆38Updated 2 weeks ago
- Structural variant (SV) analysis tools☆39Updated last year