zstephens / telogator2
A method for measuring allele-specific telomere length and characterizing telomere variant repeat sequences from long reads.
☆16Updated 2 weeks ago
Alternatives and similar repositories for telogator2
Users that are interested in telogator2 are comparing it to the libraries listed below
Sorting:
- Automated Detection and Qualification of Differential Methylation☆14Updated last year
- ☆17Updated last month
- ☆16Updated 4 months ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- A method for measuring chromosome-specific telomere length from long reads☆21Updated 11 months ago
- Structural variant (SV) analysis tools☆36Updated 10 months ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 3 months ago
- A tool to detect structural variant☆18Updated 2 years ago
- ☆20Updated 2 months ago
- Clair3-Trio: variant calling in trio using Nanopore long-reads☆14Updated last year
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆27Updated this week
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated last year
- Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs).☆13Updated last month
- ☆17Updated last year
- Immuological gene typing and annotation for genome assembly☆36Updated 2 months ago
- Codes for the Iso-Seq variant-calling paper☆11Updated 2 years ago
- Clair3-RNA - a long-read small variant caller for RNA sequencing data☆22Updated last month
- A tutorial on structural variant calling for short read sequencing data☆35Updated 6 months ago
- ☆30Updated 2 years ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆22Updated 2 years ago
- ☆18Updated last month
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated last year
- Structural variant merging tool☆49Updated 8 months ago
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- Tumor-normal variant calling workflow using HiFi reads☆19Updated last week
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 5 months ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 5 months ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆25Updated 2 weeks ago
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆19Updated 4 years ago