gaolabtools / scNanoGPSLinks
Single cell Nanopore sequencing data for Genotype and Phenotype
☆53Updated 2 weeks ago
Alternatives and similar repositories for scNanoGPS
Users that are interested in scNanoGPS are comparing it to the libraries listed below
Sorting:
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆41Updated 6 months ago
- Full-length transcriptome splicing and mutation analysis☆83Updated 11 months ago
- SingleCell Nanopore sequencing data analysis☆60Updated this week
- A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.☆35Updated last week
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆59Updated 5 months ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆66Updated 7 months ago
- T1K is a versatile methods to genotype highly polymorphic genes (e.g. KIR, HLA) with bulk or single-cell RNA-seq, WGS or WES data.☆73Updated last month
- ☆59Updated 3 years ago
- Software for Quantifying Interspersed Repeat Expression☆56Updated 2 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆52Updated 3 years ago
- HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jo…☆69Updated 3 months ago
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 3 months ago
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆62Updated 2 months ago
- ☆91Updated 2 weeks ago
- Estimation of Promoter Activity from RNA-Seq data☆53Updated 3 years ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆91Updated 2 weeks ago
- mgatk: mitochondrial genome analysis toolkit☆108Updated 4 months ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆69Updated last year
- Publication quality NGS track plotting☆113Updated 2 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆73Updated 2 years ago
- Long-read Isoform Quantification and Analysis☆39Updated 2 months ago
- Lightweight converter between hic and cool contact matrices.☆73Updated 10 months ago
- MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.☆57Updated 2 months ago
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆20Updated 3 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- Classify output of AmpliconArchitect to detect types of focal amplifications present☆19Updated last week
- Tutorial Website☆59Updated 4 years ago
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆75Updated 10 months ago
- SNV calling from single cell sequencing☆100Updated 6 months ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆60Updated last month