Single cell Nanopore sequencing data for Genotype and Phenotype
☆61May 15, 2025Updated last year
Alternatives and similar repositories for scNanoGPS
Users that are interested in scNanoGPS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SingleCell Nanopore sequencing data analysis☆71May 30, 2025Updated last year
- End-to-end analysis of Oxford Nanopore single-cell sequencing, from barcode and UMI identification to gene and transcript expression☆121Jan 23, 2026Updated 8 months ago
- ☆24Jul 30, 2025Updated last year
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆27Mar 3, 2026Updated 6 months ago
- Diagnostic functions to assess the quality of cell type annotations in single-cell RNA sequencing data☆17Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Tools for detecting alternative splicing events and genotype in single-cell gene expression data.☆16Jan 16, 2024Updated 2 years ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆20Apr 24, 2024Updated 2 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16May 17, 2022Updated 4 years ago
- A universal toolkit for upstream processing of long RNA reads☆239Updated this week
- Full-length transcriptome splicing and mutation analysis☆94Mar 23, 2026Updated 6 months ago
- The Isoforms from Single-Cell; Long-read Expression Suite☆42Jan 14, 2025Updated last year
- longcallR is a tool for SNP calling, haplotype phasing, and allele-specific analysis with long-read RNA-seq data.☆96Aug 2, 2026Updated last month
- ☆39Apr 25, 2023Updated 3 years ago
- An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data☆15May 17, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆68Oct 11, 2024Updated last year
- DOLPHIN: Advances Single-cell RNA-seq Analysis Beyond Gene-Level by Integrating Exon-Level Quantification and Junction Reads with Deep Ne…☆17Sep 7, 2026Updated 2 weeks ago
- ☆19Mar 8, 2023Updated 3 years ago
- ☆10May 31, 2022Updated 4 years ago
- A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.☆67Aug 13, 2026Updated last month
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆54Oct 21, 2025Updated 11 months ago
- Detection of m6A from direct RNA-Seq data☆134May 19, 2025Updated last year
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Jul 13, 2023Updated 3 years ago
- ☆10Mar 11, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆17Jan 13, 2025Updated last year
- ☆22Sep 8, 2023Updated 3 years ago
- The Flexible Demultiplexer☆47Sep 15, 2026Updated last week
- Short course using RStudio for biological data analysis☆14Jul 7, 2022Updated 4 years ago
- A method for measuring allele-specific telomere length and characterizing telomere variant repeat sequences from long reads.☆34Feb 5, 2026Updated 7 months ago
- ☆27Nov 14, 2025Updated 10 months ago
- LongSom tool for long-reads☆12May 20, 2025Updated last year
- LACE 2.0 is a new release of the LACE R Bioconductor package, which provides an interactive user interface to perform clonal evolution an…☆16Apr 7, 2026Updated 5 months ago
- Yet another nanopore modification comparison tool☆12Mar 4, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆97Sep 9, 2026Updated 2 weeks ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆57Sep 11, 2026Updated last week
- ☆18Apr 18, 2024Updated 2 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆80Mar 21, 2023Updated 3 years ago
- Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu☆26Sep 2, 2026Updated 3 weeks ago
- simplified cellranger for long-read data☆22Aug 27, 2025Updated last year
- A set of Pyro models and functions to infer CNA from scRNA-seq data☆11Aug 14, 2023Updated 3 years ago