gaolabtools / scNanoGPSLinks
Single cell Nanopore sequencing data for Genotype and Phenotype
☆54Updated 6 months ago
Alternatives and similar repositories for scNanoGPS
Users that are interested in scNanoGPS are comparing it to the libraries listed below
Sorting:
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆43Updated 3 weeks ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆68Updated 4 months ago
- SingleCell Nanopore sequencing data analysis☆61Updated 5 months ago
- ☆59Updated 4 months ago
- optimization of ribosome P-site positioning in ribosome profiling data☆55Updated 8 months ago
- ☆63Updated 2 months ago
- Quantification of transposable element expression using RNA-seq☆76Updated last year
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆77Updated 2 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆81Updated 4 years ago
- The Isoforms from Single-Cell; Long-read Expression Suite☆35Updated 10 months ago
- Estimation of Promoter Activity from RNA-Seq data☆56Updated 4 months ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆73Updated last year
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 6 months ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆50Updated last month
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆62Updated last month
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆51Updated last month
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated 3 weeks ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆97Updated last week
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆39Updated 9 months ago
- ☆98Updated last month
- T1K is a versatile methods to genotype highly polymorphic genes (e.g. KIR, HLA) with bulk or single-cell RNA-seq, WGS or WES data.☆86Updated last month
- Estimate locus specific human LINE-1 expression.☆39Updated last week
- A list of alternative splicing analysis resources☆46Updated 7 months ago
- A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.☆45Updated 2 weeks ago
- Software for Quantifying Interspersed Repeat Expression☆63Updated 3 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 4 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- Quantification of isoform usage and alternative polyadenylation (APA) from single-cell RNA-seq using a Nextflow-based pipeline.☆30Updated 2 weeks ago