Single cell Nanopore sequencing data for Genotype and Phenotype
☆57May 15, 2025Updated 10 months ago
Alternatives and similar repositories for scNanoGPS
Users that are interested in scNanoGPS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SingleCell Nanopore sequencing data analysis☆64May 30, 2025Updated 9 months ago
- ☆106Jan 23, 2026Updated 2 months ago
- ☆22Jul 30, 2025Updated 7 months ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Mar 3, 2026Updated 3 weeks ago
- Diagnostic functions to assess the quality of cell type annotations in single-cell RNA sequencing data☆13Jan 25, 2026Updated 2 months ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.☆53Updated this week
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆20Apr 24, 2024Updated last year
- Full-length transcriptome splicing and mutation analysis☆87Jun 24, 2024Updated last year
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆208Updated this week
- The Isoforms from Single-Cell; Long-read Expression Suite☆38Jan 14, 2025Updated last year
- Tools for detecting alternative splicing events and genotype in single-cell gene expression data.☆15Jan 16, 2024Updated 2 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16May 17, 2022Updated 3 years ago
- ☆39Apr 25, 2023Updated 2 years ago
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆84Nov 13, 2025Updated 4 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆65Oct 11, 2024Updated last year
- An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data☆15May 17, 2025Updated 10 months ago
- Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single…☆19Updated this week
- ☆14Oct 24, 2025Updated 5 months ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆73Mar 16, 2026Updated last week
- ☆10May 31, 2022Updated 3 years ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆50Oct 21, 2025Updated 5 months ago
- A method for measuring allele-specific telomere length and characterizing telomere variant repeat sequences from long reads.☆29Feb 5, 2026Updated last month
- Detection of m6A from direct RNA-Seq data☆131May 19, 2025Updated 10 months ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- T1K is a versatile methods to genotype highly polymorphic genes (e.g. KIR, HLA) with bulk or single-cell RNA-seq, WGS or WES data.☆98Dec 21, 2025Updated 3 months ago
- ☆10Mar 11, 2025Updated last year
- ☆20Sep 8, 2023Updated 2 years ago
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Jul 13, 2023Updated 2 years ago
- ☆19Mar 8, 2023Updated 3 years ago
- Short course using RStudio for biological data analysis☆14Jul 7, 2022Updated 3 years ago
- DOLPHIN: Advances Single-cell RNA-seq Analysis Beyond Gene-Level by Integrating Exon-Level Quantification and Junction Reads with Deep Ne…☆14Jul 16, 2025Updated 8 months ago
- LongSom tool for long-reads☆11May 20, 2025Updated 10 months ago
- De novo construction of isoforms from long-read data☆35Jun 10, 2025Updated 9 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- LACE 2.0 is a new release of the LACE R Bioconductor package, which provides an interactive user interface to perform clonal evolution an…☆15Mar 9, 2026Updated 2 weeks ago
- Code for spatial subclone paper☆17Jan 23, 2025Updated last year
- JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts, then searches for gene fusions☆108Mar 20, 2026Updated last week
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆24Mar 9, 2026Updated 2 weeks ago
- simplified cellranger for long-read data☆21Aug 27, 2025Updated 6 months ago
- A set of Pyro models and functions to infer CNA from scRNA-seq data☆11Aug 14, 2023Updated 2 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆78Mar 21, 2023Updated 3 years ago