gaolabtools / scNanoGPS
Single cell Nanopore sequencing data for Genotype and Phenotype
☆46Updated last month
Alternatives and similar repositories for scNanoGPS:
Users that are interested in scNanoGPS are comparing it to the libraries listed below
- Full-length transcriptome splicing and mutation analysis☆80Updated 8 months ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆36Updated 2 months ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆62Updated 4 months ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆57Updated 2 months ago
- ☆81Updated this week
- SingleCell Nanopore sequencing data analysis☆56Updated 2 months ago
- T1K is a versatile methods to genotype highly polymorphic genes (e.g. KIR, HLA) with bulk or single-cell RNA-seq, WGS or WES data.☆65Updated 3 weeks ago
- ☆18Updated 3 months ago
- ☆54Updated 3 years ago
- Software for Quantifying Interspersed Repeat Expression☆53Updated 2 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆48Updated last week
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆51Updated 3 years ago
- SNV calling from single cell sequencing☆93Updated 3 months ago
- Quantification of transposable element expression using RNA-seq☆64Updated last year
- HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jo…☆69Updated this week
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆38Updated 3 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆56Updated last year
- A tool for the calculation of RNA-editing index for RNA seq data☆40Updated last year
- A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.☆30Updated 2 weeks ago
- ☆59Updated 6 months ago
- Publication quality NGS track plotting☆111Updated 2 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- Estimation of Promoter Activity from RNA-Seq data☆50Updated 3 years ago
- Tutorial Website☆56Updated 4 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆65Updated 4 years ago
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆74Updated 7 months ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆73Updated last year
- Interactive multiscale visualization for structural variation in human genomes☆67Updated 2 weeks ago
- Battenberg R package for subclonal copynumber estimation☆84Updated 2 weeks ago
- A list of alternative splicing analysis resources☆42Updated 3 months ago