The Isoforms from Single-Cell; Long-read Expression Suite
☆38Jan 14, 2025Updated last year
Alternatives and similar repositories for Isosceles
Users that are interested in Isosceles are comparing it to the libraries listed below
Sorting:
- ☆27Nov 2, 2023Updated 2 years ago
- ☆22Jul 30, 2025Updated 7 months ago
- Full-length transcriptome splicing and mutation analysis☆86Jun 24, 2024Updated last year
- De novo construction of isoforms from long-read data☆35Jun 10, 2025Updated 8 months ago
- Single cell Nanopore sequencing data for Genotype and Phenotype☆57May 15, 2025Updated 9 months ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆20Apr 24, 2024Updated last year
- FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.…☆12May 8, 2025Updated 9 months ago
- A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.☆52Feb 19, 2026Updated last week
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆227Feb 20, 2026Updated last week
- Pipeline for the identification of (coding) gene structures in draft genomes.☆36May 9, 2024Updated last year
- cDNA read preprocessing☆87Jul 25, 2024Updated last year
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆204Updated this week
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆10May 12, 2025Updated 9 months ago
- long read RNA-seq quantification☆105Feb 4, 2026Updated 3 weeks ago
- interactive visualization of single-cell transcriptomes☆11Dec 23, 2023Updated 2 years ago
- ☆14Oct 24, 2025Updated 4 months ago
- Long read to rMATS☆32May 5, 2023Updated 2 years ago
- SingleCell Nanopore sequencing data analysis☆64May 30, 2025Updated 9 months ago
- ☆83Jan 16, 2026Updated last month
- Splicing-aware time-course network enricher - exploratory analysis for transcriptomics and/or proteomics time series data☆12Dec 11, 2025Updated 2 months ago
- R package for nucleotide conversion sequencing data analysis☆16Jan 13, 2026Updated last month
- De novo clustering of long transcript reads into genes☆70Apr 27, 2025Updated 10 months ago
- Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:☆21Mar 30, 2024Updated last year
- Comparison of multiple long read datasets☆158Dec 2, 2025Updated 2 months ago
- Quantification of isoform usage and alternative polyadenylation (APA) from single-cell RNA-seq using a Nextflow-based pipeline.☆31Nov 6, 2025Updated 3 months ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Jul 20, 2024Updated last year
- Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu☆15Feb 20, 2026Updated last week
- Create statistic summary of an Oxford Nanopore read dataset☆131Nov 4, 2022Updated 3 years ago
- Evaluating genome assemblies☆115Jan 11, 2026Updated last month
- ☆20Oct 5, 2022Updated 3 years ago
- PECAT, a phased error correct and assembly tool☆59Dec 8, 2025Updated 2 months ago
- Small variant calling for haploid samples☆48Jan 5, 2026Updated last month
- Tools for detecting alternative splicing events and genotype in single-cell gene expression data.☆15Jan 16, 2024Updated 2 years ago
- CosMx Spatial Molecular Imager-derived cell profiles to aid in cell typing of SMI data.☆34Jan 24, 2025Updated last year
- A method for measuring allele-specific telomere length and characterizing telomere variant repeat sequences from long reads.☆27Feb 5, 2026Updated 3 weeks ago
- Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single…☆18Updated this week
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆15Apr 4, 2024Updated last year
- Single-cell analysis methods in Rust☆30Nov 4, 2025Updated 3 months ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆47Oct 21, 2025Updated 4 months ago