The Isoforms from Single-Cell; Long-read Expression Suite
☆41Jan 14, 2025Updated last year
Alternatives and similar repositories for Isosceles
Users that are interested in Isosceles are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆24Jul 30, 2025Updated last year
- Full-length transcriptome splicing and mutation analysis☆94Mar 23, 2026Updated 5 months ago
- FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.…☆12May 8, 2025Updated last year
- Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single…☆25Updated this week
- A universal toolkit for upstream processing of long RNA reads☆237Updated this week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆12May 12, 2025Updated last year
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆255Aug 11, 2026Updated 2 weeks ago
- long read RNA-seq quantification☆123Aug 19, 2026Updated last week
- De novo construction of isoforms from long-read data☆39Updated this week
- interactive visualization of single-cell transcriptomes☆11Mar 10, 2026Updated 5 months ago
- Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:☆23Mar 30, 2024Updated 2 years ago
- SingleCell Nanopore sequencing data analysis☆69May 30, 2025Updated last year
- Quantification of isoform usage and alternative polyadenylation (APA) from single-cell RNA-seq using a Nextflow-based pipeline.☆37Nov 6, 2025Updated 9 months ago
- cDNA read preprocessing☆96Jul 25, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆20Apr 24, 2024Updated 2 years ago
- Single-cell Iso Prep☆17Oct 28, 2023Updated 2 years ago
- Long read to rMATS☆32May 5, 2023Updated 3 years ago
- ☆20Oct 5, 2022Updated 3 years ago
- Splicing-aware time-course network enricher - exploratory analysis for transcriptomics and/or proteomics time series data☆11Dec 11, 2025Updated 8 months ago
- SCASA: Single cell transcript quantification tool☆23Nov 24, 2023Updated 2 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq at locus- or subfamily-level☆25Updated this week
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆27Mar 3, 2026Updated 5 months ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆16Apr 4, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A Python library to visualize and analyze long-read transcriptomes☆69Jan 19, 2026Updated 7 months ago
- Pipeline for the identification of (coding) gene structures in draft genomes.☆42Jul 28, 2026Updated last month
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16May 17, 2022Updated 4 years ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆37Apr 17, 2026Updated 4 months ago
- Tools for detecting alternative splicing events and genotype in single-cell gene expression data.☆16Jan 16, 2024Updated 2 years ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆39Nov 8, 2023Updated 2 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆68Oct 11, 2024Updated last year
- Isoform co-usage networks from single-cell RNA-seq data☆18Feb 21, 2024Updated 2 years ago
- Visualizing transcript structure and annotation using ggplot2☆170Aug 24, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆68Mar 19, 2026Updated 5 months ago
- ☆21Apr 20, 2026Updated 4 months ago
- single-cell clustering based on alternative splicing landscapes☆23Mar 20, 2024Updated 2 years ago
- ☆15Oct 24, 2025Updated 10 months ago
- ☆55Aug 1, 2024Updated 2 years ago
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆25Feb 28, 2023Updated 3 years ago
- Codes for the Iso-Seq variant-calling paper☆11Apr 28, 2023Updated 3 years ago