The Isoforms from Single-Cell; Long-read Expression Suite
☆40Jan 14, 2025Updated last year
Alternatives and similar repositories for Isosceles
Users that are interested in Isosceles are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆25Jul 30, 2025Updated 11 months ago
- Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single…☆25Jun 20, 2026Updated last month
- Full-length transcriptome splicing and mutation analysis☆93Mar 23, 2026Updated 3 months ago
- FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.…☆12May 8, 2025Updated last year
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆233Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆12May 12, 2025Updated last year
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆251Jul 14, 2026Updated last week
- long read RNA-seq quantification☆116Updated this week
- interactive visualization of single-cell transcriptomes☆11Mar 10, 2026Updated 4 months ago
- SingleCell Nanopore sequencing data analysis☆69May 30, 2025Updated last year
- Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:☆23Mar 30, 2024Updated 2 years ago
- Quantification of isoform usage and alternative polyadenylation (APA) from single-cell RNA-seq using a Nextflow-based pipeline.☆36Nov 6, 2025Updated 8 months ago
- cDNA read preprocessing☆95Jul 25, 2024Updated last year
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆20Apr 24, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- De novo construction of isoforms from long-read data☆38Jul 2, 2026Updated 2 weeks ago
- Long read to rMATS☆32May 5, 2023Updated 3 years ago
- Single-cell Iso Prep☆17Oct 28, 2023Updated 2 years ago
- ☆20Oct 5, 2022Updated 3 years ago
- Splicing-aware time-course network enricher - exploratory analysis for transcriptomics and/or proteomics time series data☆11Dec 11, 2025Updated 7 months ago
- SCASA: Single cell transcript quantification tool☆23Nov 24, 2023Updated 2 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆23Apr 16, 2026Updated 3 months ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆27Mar 3, 2026Updated 4 months ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆15Apr 4, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A Python library to visualize and analyze long-read transcriptomes☆69Jan 19, 2026Updated 6 months ago
- Single cell Nanopore sequencing data for Genotype and Phenotype☆59May 15, 2025Updated last year
- A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.☆63Jun 26, 2026Updated 3 weeks ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆38Nov 8, 2023Updated 2 years ago
- Pipeline for the identification of (coding) gene structures in draft genomes.☆38May 9, 2024Updated 2 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16May 17, 2022Updated 4 years ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆37Apr 17, 2026Updated 3 months ago
- Tools for detecting alternative splicing events and genotype in single-cell gene expression data.☆15Jan 16, 2024Updated 2 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆68Oct 11, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆67Mar 19, 2026Updated 4 months ago
- Isoform co-usage networks from single-cell RNA-seq data☆18Feb 21, 2024Updated 2 years ago
- Visualizing transcript structure and annotation using ggplot2☆169Aug 24, 2024Updated last year
- ☆21Apr 20, 2026Updated 3 months ago
- The Flexible Demultiplexer☆44Mar 30, 2026Updated 3 months ago
- single-cell clustering based on alternative splicing landscapes☆23Mar 20, 2024Updated 2 years ago
- ☆55Aug 1, 2024Updated last year