ucagenomix / sicelore-2.1
☆15Updated this week
Related projects ⓘ
Alternatives and complementary repositories for sicelore-2.1
- Long-read Isoform Quantification and Analysis☆39Updated 3 months ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆13Updated 7 months ago
- Single cell Nanopore sequencing data for Genotype and Phenotype☆39Updated 2 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆56Updated 3 weeks ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆33Updated 3 months ago
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆14Updated 4 months ago
- SingleCell Nanopore sequencing data analysis☆51Updated 2 weeks ago
- ☆33Updated last year
- ☆19Updated last year
- ☆24Updated 2 years ago
- ☆58Updated 3 months ago
- ENCODE long read RNA-seq pipeline☆44Updated last year
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- Error correction of ONT transcript reads☆58Updated last year
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆36Updated last month
- ☆34Updated 5 years ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆22Updated 5 months ago
- single-nucleus nanopore reads processing pipeline☆15Updated last year
- 4C-seq processing pipeline☆22Updated 6 months ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆40Updated last year
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated 3 weeks ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆45Updated 4 years ago
- ☆24Updated last month
- Methylation Phasing for Nanopore Sequencing☆44Updated last year
- Somatic structural variant caller for long-read data☆47Updated this week
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆36Updated 2 years ago
- LongcallR is a small variant caller for single molecule long-read RNA-seq data☆41Updated last month
- Estimate the cis-regulatory activity of transposable element (TEs) subfamilies☆10Updated 10 months ago