CosMx Spatial Molecular Imager-derived cell profiles to aid in cell typing of SMI data.
☆38Jan 24, 2025Updated last year
Alternatives and similar repositories for CosMx-Cell-Profiles
Users that are interested in CosMx-Cell-Profiles are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An R package for performing cell typing in SMI and other single cell data☆56May 1, 2026Updated 5 months ago
- This repository is an exploratory resource to accelerate opensource analysis of CosMx® Spatial Molecular Imager (SMI) data. Contained her…☆117Updated this week
- ☆33May 19, 2025Updated last year
- Who am I ?☆11Dec 13, 2025Updated 9 months ago
- Tools for NanoString GeoMx Digital Spatial Profiler data for reading DCC and PKC files to NanoStringGeomxSet class, Normalization and QC.…☆49Sep 29, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆15Oct 24, 2025Updated 11 months ago
- Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).☆24Sep 29, 2025Updated last year
- Critical downstream analysis steps for single-cell RNA sequencing data☆13Feb 21, 2021Updated 5 years ago
- scPred package for cell type prediction from scRNA-seq data☆107Jan 18, 2024Updated 2 years ago
- Documentation☆20Aug 28, 2026Updated last month
- ☆63Aug 8, 2024Updated 2 years ago
- Genearlized mapping scripts for RNA-seq and Patch-seq data☆19Sep 29, 2025Updated last year
- The Isoforms from Single-Cell; Long-read Expression Suite☆42Jan 14, 2025Updated last year
- Harmonize high-content image analysis tool outputs for processing with Pycytominer and other Cytomining tools.☆21Sep 21, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- De novo construction of isoforms from long-read data☆47Sep 9, 2026Updated 3 weeks ago
- The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This al…☆44Feb 5, 2026Updated 7 months ago
- Scripts for analysis of genome-wide perturb-seq in primary human T cells☆27Aug 28, 2026Updated last month
- Python library for plotting Cellphonedb results. Ported from ktplots R package.☆57Jun 29, 2026Updated 3 months ago
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆260Jun 28, 2026Updated 3 months ago
- Interactive visualization of spatial omics data☆91Sep 8, 2026Updated 3 weeks ago
- Pipeline for the identification of (coding) gene structures in draft genomes.☆44Jul 28, 2026Updated 2 months ago
- ☆46Sep 22, 2026Updated last week
- A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …☆100Mar 6, 2026Updated 6 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Client to access ExperimentHub resources☆11Aug 19, 2026Updated last month
- FastReseg for detection and correction of cell segmentation error based on spatial profile of transcripts.☆16Apr 30, 2026Updated 5 months ago
- ☆19Dec 15, 2023Updated 2 years ago
- The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequ…☆75Apr 9, 2026Updated 5 months ago
- Hierarchical Cell Annotation☆32Nov 17, 2024Updated last year
- ☆21Sep 24, 2026Updated last week
- Inferring multi-modality dynamics for single cell genomics data☆15Dec 18, 2025Updated 9 months ago
- Extension of SpatialExperiment with sf☆58Updated this week
- PECAT, a phased error correct and assembly tool☆68Dec 8, 2025Updated 9 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- List of Spatial Transcriptomics related Tools organized per category☆201Sep 9, 2026Updated 3 weeks ago
- epigenome analysis to rank transcription factors☆15Dec 19, 2019Updated 6 years ago
- ☆31Sep 22, 2023Updated 3 years ago
- Computational Framework to Analyse Spatial Heterogeneity in Visum, IMC or MIBI data sets☆12May 3, 2022Updated 4 years ago
- ☆30Jul 25, 2024Updated 2 years ago
- Whole mouse brain snATAC seq analysis☆29Apr 18, 2025Updated last year
- Probabilistic cell segmentation for in situ spatial transcriptomics☆192Sep 22, 2026Updated last week