PECAT, a phased error correct and assembly tool
☆65Dec 8, 2025Updated 5 months ago
Alternatives and similar repositories for PECAT
Users that are interested in PECAT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Evaluating genome assemblies☆121Mar 3, 2026Updated 2 months ago
- JTK -- a regional diploid genome assembler☆26Apr 22, 2026Updated 3 weeks ago
- Reduction of Althaps and Duplicate Contigs for Improved Downstream Analysis☆20Apr 10, 2026Updated last month
- Resources for phage genomics and annotation☆10Oct 27, 2025Updated 6 months ago
- Evaluation and polishing workflows for T2T genome assemblies☆153Apr 17, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- Telomere-to-Telomere diploid Indian Genome☆15Mar 5, 2026Updated 2 months ago
- Extracting paths from assembly graphs☆24Apr 26, 2024Updated 2 years ago
- ☆120Oct 10, 2025Updated 7 months ago
- Minimizer-based assembly scaffolding and mapping using long reads☆51Apr 1, 2026Updated last month
- Linear-time de novo Long Read Assembler☆41Mar 19, 2026Updated 2 months ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- A genome completeness evaluation tool based on miniprot☆242Sep 18, 2025Updated 8 months ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆109Jul 23, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆15Feb 20, 2023Updated 3 years ago
- ☆42May 19, 2025Updated last year
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆36Apr 20, 2026Updated last month
- haplotypic duplication identification tool☆285Oct 30, 2025Updated 6 months ago
- High-precision TE Annotator☆157Dec 4, 2025Updated 5 months ago
- ☆18Apr 28, 2026Updated 3 weeks ago
- A genomic k-mer counter (and sequence utility) with nice features.☆166Jul 4, 2025Updated 10 months ago
- SRF: Satellite Repeat Finder☆102Jan 8, 2024Updated 2 years ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆239Sep 6, 2024Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆49Feb 23, 2021Updated 5 years ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆196May 11, 2025Updated last year
- Programs implementing the trio-binning genome assembly method☆21Nov 22, 2023Updated 2 years ago
- A tool for evaluating long-read de novo assembly results☆53Aug 25, 2024Updated last year
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆38Mar 5, 2023Updated 3 years ago
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- Yet another k-mer analyzer☆171Dec 30, 2025Updated 4 months ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆391Apr 22, 2026Updated 3 weeks ago
- ☆39Feb 22, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- k-mer based assembly evaluation☆343Jun 28, 2024Updated last year
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆26Oct 24, 2025Updated 6 months ago
- Repeat-aware polishing genomes assembled using HiFi long reads☆102Apr 7, 2026Updated last month
- Identify and find telomeres, or telomeric repeats in a genome.☆164Nov 24, 2025Updated 5 months ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- recompute GFA link overlaps☆26Sep 14, 2022Updated 3 years ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆171Oct 29, 2025Updated 6 months ago