☆75Jun 2, 2023Updated 2 years ago
Alternatives and similar repositories for last-genome-alignments
Users that are interested in last-genome-alignments are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated 9 months ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆36Mar 27, 2019Updated 7 years ago
- ☆13Nov 15, 2017Updated 8 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Portable solution to generate genome alignment chains using lastz☆61Dec 20, 2025Updated 3 months ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Annotate Olfactory receptor CDS from genome☆11Apr 29, 2023Updated 2 years ago
- base-level dotplots from PAF alignments☆33Sep 18, 2025Updated 6 months ago
- ☆41Jun 8, 2023Updated 2 years ago
- Tools for improving the sensitivity and specificity of genome alignments☆58Mar 12, 2026Updated 2 weeks ago
- ☆16Nov 25, 2019Updated 6 years ago
- The complete sequence of a Chinese individual☆12Oct 8, 2024Updated last year
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated 11 months ago
- Repeat-aware polishing genomes assembled using HiFi long reads☆98Nov 12, 2025Updated 4 months ago
- haplotypic duplication identification tool☆277Oct 30, 2025Updated 4 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A tool for performing collinearity-incorporating homology inference☆33Oct 7, 2023Updated 2 years ago
- ☆26Jan 26, 2026Updated 2 months ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆109Jun 17, 2022Updated 3 years ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆110Mar 13, 2026Updated 2 weeks ago
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆205Nov 23, 2025Updated 4 months ago
- A tool for quick and accurate calculation of syntenic diversity.☆42Sep 22, 2025Updated 6 months ago
- High-precision TE Annotator☆151Dec 4, 2025Updated 3 months ago
- Structural Variant Identification Method using Genome Assemblies☆139Sep 16, 2022Updated 3 years ago
- Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)☆373Feb 13, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated last year
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Apr 28, 2020Updated 5 years ago
- Find and visualize rearrangements in DNA sequences☆55Dec 1, 2025Updated 3 months ago
- A JBrowse 1 plugin to view multiple alignment format (MAF) files☆27Oct 25, 2023Updated 2 years ago
- An accurate GFF3/GTF lift over pipeline☆531Aug 1, 2023Updated 2 years ago
- Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs☆20Sep 18, 2019Updated 6 years ago
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆13Oct 1, 2025Updated 5 months ago
- A genome completeness evaluation tool based on miniprot☆237Sep 18, 2025Updated 6 months ago
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆189Oct 15, 2025Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- ☆18Jan 29, 2025Updated last year
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- source code for EVM☆122Nov 29, 2024Updated last year
- A gap-closing software tool that uses long reads to enhance genome assembly.☆233Sep 6, 2024Updated last year
- Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …☆173Aug 8, 2024Updated last year
- Pipeline for the identification of (coding) gene structures in draft genomes.☆36May 9, 2024Updated last year
- Program for aligning DNA sequences, a pairwise aligner.☆240Jun 16, 2025Updated 9 months ago