mcfrith / last-genome-alignmentsLinks
☆63Updated 2 years ago
Alternatives and similar repositories for last-genome-alignments
Users that are interested in last-genome-alignments are comparing it to the libraries listed below
Sorting:
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆93Updated last year
- Application of pan-genome for population☆112Updated 11 months ago
- De novo clustering of long transcript reads into genes☆68Updated 5 months ago
- ☆39Updated last week
- Evaluating genome assemblies☆105Updated last month
- Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file☆52Updated 2 months ago
- tomato graph pangenome☆84Updated 2 years ago
- PECAT, a phased error correct and assembly tool☆54Updated 2 months ago
- MCHelper: An automatic tool to curate transposable element libraries☆42Updated 3 months ago
- A program for assessing the T2T genome continuity☆87Updated 3 weeks ago
- Mapping pipeline for data generated using Arima-HiC☆80Updated last year
- A Nextflow pipeline for evaluating assembly quality☆37Updated 2 weeks ago
- ☆45Updated 7 months ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 9 months ago
- Best practices and workflow for genome annotation☆78Updated 5 months ago
- The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequ…☆51Updated 3 weeks ago
- perSVade: personalized Structural Variation detection☆40Updated last month
- High-precision TE Annotator☆131Updated 3 weeks ago
- paml documentation and tutorials☆62Updated 4 months ago
- Evaluate variant calls and its combination with k-mer multiplicity☆67Updated 2 years ago
- FastOMA is a scalable software package to infer orthology relationship.☆83Updated this week
- Structural variant merging tool☆55Updated last year
- Tandem repeat expansion detection or genotyping from long-read alignments☆127Updated last month
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆60Updated last year
- Structural Variant Identification Method using Genome Assemblies☆124Updated 3 years ago
- A genomic k-mer counter (and sequence utility) with nice features.☆144Updated 3 months ago
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆78Updated 6 months ago
- PacBio BAM toolkit☆46Updated 7 months ago
- ☆31Updated 3 weeks ago
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago