mcfrith / last-genome-alignments
☆61Updated last year
Alternatives and similar repositories for last-genome-alignments
Users that are interested in last-genome-alignments are comparing it to the libraries listed below
Sorting:
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆88Updated 9 months ago
- Tandem repeat expansion detection or genotyping from long-read alignments☆105Updated 3 months ago
- Application of pan-genome for population☆104Updated 7 months ago
- ☆33Updated last month
- Evaluating genome assemblies☆89Updated 2 months ago
- Structural Variant Identification Method using Genome Assemblies☆115Updated 2 years ago
- High-precision TE Annotator☆118Updated this week
- A genomic k-mer counter (and sequence utility) with nice features.☆136Updated 2 months ago
- Mapping pipeline for data generated using Arima-HiC☆76Updated 11 months ago
- PacBio BAM toolkit☆43Updated 2 months ago
- WDL workflows for variant calling and assembly using ONT☆34Updated last week
- tomato graph pangenome☆81Updated 2 years ago
- Phased assembly variant caller☆115Updated 5 months ago
- Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file☆50Updated 7 months ago
- perSVade: personalized Structural Variation detection☆39Updated 2 months ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 4 months ago
- De novo clustering of long transcript reads into genes☆60Updated 2 weeks ago
- Annotation helper tool for the manual curation of transposable element consensus sequences☆48Updated 2 months ago
- A program for assessing the T2T genome continuity☆73Updated last month
- The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequ…☆44Updated 2 years ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆100Updated 7 months ago
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆71Updated 2 weeks ago
- MCHelper: An automatic tool to curate transposable element libraries☆36Updated last month
- PECAT, a phased error correct and assembly tool☆49Updated 2 weeks ago
- A Nextflow pipeline for evaluating assembly quality☆33Updated this week
- A organelle de novo genome assembly toolkit☆59Updated 2 months ago
- source code for EVM☆110Updated 5 months ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆40Updated 2 weeks ago
- Structural variant discovery and genotyping from mapped PacBio HiFi data☆48Updated 3 weeks ago
- Evaluate variant calls and its combination with k-mer multiplicity☆66Updated 2 years ago