ksahlin / isONclust
De novo clustering of long transcript reads into genes
☆56Updated 3 years ago
Alternatives and similar repositories for isONclust:
Users that are interested in isONclust are comparing it to the libraries listed below
- Error correction of ONT transcript reads☆59Updated last year
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆55Updated last year
- De novo construction of isoforms from long-read data☆26Updated 2 months ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- PECAT, a phased error correct and assembly tool☆47Updated last month
- ☆27Updated this week
- Evaluating genome assemblies☆83Updated last week
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated 11 months ago
- ☆29Updated 2 months ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- REINDEER REad Index for abuNDancE quERy☆57Updated 6 months ago
- ☆58Updated last year
- ☆29Updated this week
- WDL workflows for variant calling and assembly using ONT☆32Updated 2 weeks ago
- Classifier for metagenomic sequences using FM-index with run-block compressed BWT.☆53Updated last month
- Graph-based assembly phasing☆72Updated 3 months ago
- ☆46Updated 3 months ago
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆72Updated 4 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆100Updated 4 months ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆45Updated 6 months ago
- Phased assembly variant caller☆109Updated 2 months ago
- perSVade: personalized Structural Variation detection☆38Updated 2 months ago
- 🔗Genome assembly scaffolder using minimizer graphs☆83Updated 4 months ago
- A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data☆20Updated 2 years ago
- vcfdist: Accurately benchmarking phased variant calls☆79Updated this week
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆99Updated 3 years ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Updated 2 years ago
- Evaluate variant calls and its combination with k-mer multiplicity☆65Updated 2 years ago