ksahlin / isONclustLinks
De novo clustering of long transcript reads into genes
☆69Updated 5 months ago
Alternatives and similar repositories for isONclust
Users that are interested in isONclust are comparing it to the libraries listed below
Sorting:
- ☆64Updated 2 years ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆92Updated last year
- ☆39Updated 5 months ago
- WDL workflows for variant calling and assembly using ONT☆36Updated 2 weeks ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆104Updated 3 weeks ago
- ☆36Updated last week
- Evaluating genome assemblies☆105Updated 2 weeks ago
- PECAT, a phased error correct and assembly tool☆54Updated 2 months ago
- ☆66Updated last week
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- ☆30Updated last week
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆45Updated last week
- 🔗Genome assembly scaffolder using minimizer graphs☆84Updated 11 months ago
- A local-haplotagging-based small and structural variant caller☆80Updated 3 weeks ago
- Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.☆96Updated 2 weeks ago
- A genomic k-mer counter (and sequence utility) with nice features.☆144Updated 2 months ago
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆60Updated last year
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆68Updated 2 months ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- A program for assessing the T2T genome continuity☆86Updated last week
- Pipeline for the identification of (coding) gene structures in draft genomes.☆30Updated last year
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆78Updated 5 months ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.☆67Updated last week
- ☆66Updated 3 weeks ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆68Updated 3 years ago
- Detecting multi-genome synteny using minimizer graph mapping☆82Updated last month