ksahlin / isONclustLinks
De novo clustering of long transcript reads into genes
☆68Updated 4 months ago
Alternatives and similar repositories for isONclust
Users that are interested in isONclust are comparing it to the libraries listed below
Sorting:
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆90Updated last year
- ☆64Updated 2 years ago
- WDL workflows for variant calling and assembly using ONT☆35Updated this week
- Evaluating genome assemblies☆105Updated last month
- Hybrid error correction of long reads using colored de Bruijn graphs☆104Updated 11 months ago
- PECAT, a phased error correct and assembly tool☆54Updated last month
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆76Updated 5 months ago
- Error correction of ONT transcript reads☆58Updated last year
- ☆64Updated last month
- reference-free transcriptome assembly for short and long reads☆109Updated last year
- ☆39Updated 4 months ago
- A program for assessing the T2T genome continuity☆83Updated last week
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆68Updated 3 years ago
- A local-haplotagging-based small and structural variant caller☆79Updated 3 weeks ago
- ☆35Updated last month
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- FastOMA is a scalable software package to infer orthology relationship.☆79Updated this week
- Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.☆94Updated last month
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆52Updated 3 years ago
- perSVade: personalized Structural Variation detection☆40Updated last month
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- vcfdist: Accurately benchmarking phased variant calls☆83Updated last month
- Application of pan-genome for population☆108Updated 10 months ago
- SRF: Satellite Repeat Finder☆97Updated last year
- A genomic k-mer counter (and sequence utility) with nice features.☆143Updated last month
- Structural variant caller for real-time long-read sequencing data☆57Updated 2 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- Structural Variant Identification Method using Genome Assemblies☆122Updated 2 years ago