ksahlin / isONclust
De novo clustering of long transcript reads into genes
☆58Updated 3 years ago
Alternatives and similar repositories for isONclust:
Users that are interested in isONclust are comparing it to the libraries listed below
- ☆27Updated 2 months ago
- WDL workflows for variant calling and assembly using ONT☆33Updated last week
- Error correction of ONT transcript reads☆58Updated last year
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆85Updated 8 months ago
- Evaluating genome assemblies☆87Updated last month
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆100Updated 6 months ago
- ☆61Updated last year
- A Nextflow workflow to generate lift over files for any pair of genomes☆64Updated last week
- Structural variant discovery and genotyping from mapped PacBio HiFi data☆48Updated this week
- Classifier for metagenomic sequences using FM-index with run-block compressed BWT.☆56Updated 3 weeks ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- PacBio BAM toolkit☆43Updated last month
- Toolkit for calling structural variants using short or long reads☆102Updated last week
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆72Updated 2 weeks ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆39Updated last month
- ☆30Updated 2 months ago
- A program for assessing the T2T genome continuity☆71Updated last week
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- Evaluate variant calls and its combination with k-mer multiplicity☆66Updated 2 years ago
- perSVade: personalized Structural Variation detection☆39Updated last month
- 🔗Genome assembly scaffolder using minimizer graphs☆83Updated 6 months ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆48Updated last month
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆55Updated last year
- ☆38Updated 2 months ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 3 months ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 2 years ago